PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr6g0301221 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MYB_related | ||||||||
Protein Properties | Length: 99aa MW: 11224.6 Da PI: 10.1919 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.9 | 1.3e-09 | 13 | 56 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +WT+ +++ +a + + ++ +W+ +a+ +g g++++++k ++ RcHm_v2.0_Chr6g0301221 13 SWTPKQNKRFEKALAVYDKDtqdRWHNVAKAVG-GKSAEEVKRHY 56 7********************************.**********9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 99 aa Download sequence |
MASLSSSRNS NSSWTPKQNK RFEKALAVYD KDTQDRWHNV AKAVGGKSAE EVKRHYEILV 60 QDLMHIESGQ VAIPNYRATG SSSRGIADYE QRLMKNLKI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 2e-43 | MYB_related family protein |