PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr6g0299501 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | WRKY | ||||||||
Protein Properties | Length: 391aa MW: 43192.4 Da PI: 6.675 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 90.5 | 1.4e-28 | 191 | 249 | 1 | 58 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 ++Dgy+WrKYGqK+ ++++ pr+YY+C++a +Cpvkkkv++sae+p +++ tYegeHnh RcHm_v2.0_Chr6g0299501 191 VKDGYQWRKYGQKVTRDNPSPRAYYKCSFApTCPVKKKVQKSAENPCLLVATYEGEHNH 249 58***************************99**************************** PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 391 aa Download sequence |
MDSSTWVNTS LGLNLVANDS LQAMDEGQPP VPTITKKVGE FEGEYDIFES NLRSVKQEAG 60 AGGSVLMAQE LNRISLENKK LTEMLTVLCE NYNSLEAHVK ELMTTKQLAS ENESMILGNN 120 CLIKKRKSPV DDHQDYCNNV NMIGFTTNTS TGETSSSDEE AYKRPKEMSN VNLKISRVYV 180 RTDVSDTRLI VKDGYQWRKY GQKVTRDNPS PRAYYKCSFA PTCPVKKKVQ KSAENPCLLV 240 ATYEGEHNHI LPAEPQVITI DHGDHQGQGR NLITTALPLR HDHSSISLAP KRSSSPSSSP 300 TTVSMSMSSS SVLDSSTEPG SSFGYKPNQG RQASDDIYEE KATTFQQLLV QQMASSLTKD 360 PNFTTALAAA ISAGRFNILD QPHPHPPIPK W |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80840.1 | 2e-54 | WRKY family protein |