PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0299051

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

CO-like

Protein Properties

Length: 401aa MW: 44726 Da PI: 6.5072

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0299051	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	29	2.2e-09	75	107	4	36
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36 + C+ +++ ++lfC+ ++ +lC +C +++H RcHm_v2.0_Chr6g0299051 75 KLCDSCKSATATLFCRADSAFLCVNCDTKIHAA 107 58*****************************55 PP
2	zf-B_box	28.4	3.3e-09	117	162	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 + C+ +e+ +++ C+ ++ lC +C e+H+ H++vp+ RcHm_v2.0_Chr6g0299051 117 VWLCEVCEQAPAHVTCKADDATLCVTCDREIHSAnplsrrHERVPV 162 679****************************6689999999986 PP
3	CCT	69.6	8.2e-24	340	383	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++ RcHm_v2.0_Chr6g0299051 340 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 383 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence
MFHSGQSPHL LAKLLPRVTP PLALPWISVA HQIDRHTSIT QNETLRERER EREKRETQFY 60 SAGNPVSLER AMASKLCDSC KSATATLFCR ADSAFLCVNC DTKIHAANKL ASRHARVWLC 120 EVCEQAPAHV TCKADDATLC VTCDREIHSA NPLSRRHERV PVAPFYDSLN SDDSTAVKSD 180 AAVNFLDDRY LSDGDGDGET TEVSREEAEA ASWLLPNPKD LNSGQYVFSD MDPYLDLDYG 240 GVDPKAQTQE EQNSSGTDGV VPVQSKTVQP QTFEMELPGS KPSIYGYHGH CLSQSVSSSS 300 SMDVSVVPDG NMLTEMSDPY PKSIGDQLSH PAVQISSADR EARVLRYREK RKNRKFEKTI 360 RYASRKAYAE TRPRIKGRFA KRTEAEIEAE RLCRYGVVPS F

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence

MFHSGQSPHL LAKLLPRVTP PLALPWISVA HQIDRHTSIT QNETLRERER EREKRETQFY  60
SAGNPVSLER AMASKLCDSC KSATATLFCR ADSAFLCVNC DTKIHAANKL ASRHARVWLC  120
EVCEQAPAHV TCKADDATLC VTCDREIHSA NPLSRRHERV PVAPFYDSLN SDDSTAVKSD  180
AAVNFLDDRY LSDGDGDGET TEVSREEAEA ASWLLPNPKD LNSGQYVFSD MDPYLDLDYG  240
GVDPKAQTQE EQNSSGTDGV VPVQSKTVQP QTFEMELPGS KPSIYGYHGH CLSQSVSSSS  300
SMDVSVVPDG NMLTEMSDPY PKSIGDQLSH PAVQISSADR EARVLRYREK RKNRKFEKTI  360
RYASRKAYAE TRPRIKGRFA KRTEAEIEAE RLCRYGVVPS F

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24930.1	1e-131	CO-like family protein