PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0297621

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 669aa MW: 77858 Da PI: 7.2437

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0297621	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	74.7	2e-23	56	140	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 +fYn Y+ke GF +r+s+s +++ +e +++++ Cs g++++++ + ++r+etrtgC a++++k+ ++++w++ +lel+HnH RcHm_v2.0_Chr6g0297621 56 DFYNVYGKEQGFGIRVSNSWFRSKRKERYRAKLSCSSAGFKKKSEAN-----NPRPETRTGCPAMIVIKLVDSQRWRIVELELQHNH 137 6*******************999*************99888.....9******************************** PP FAR1 88 ela 90 +++ RcHm_v2.0_Chr6g0297621 138 QVS 140 987 PP

Sequence ? help Back to Top
Protein Sequence Length: 669 aa Download sequence
MEMEEVCLNS EPVFDEGDEY DLEGGHAVGI GETKSKQVPP QPTVGLEFDS FDEAYDFYNV 60 YGKEQGFGIR VSNSWFRSKR KERYRAKLSC SSAGFKKKSE ANNPRPETRT GCPAMIVIKL 120 VDSQRWRIVE LELQHNHQVS PQIKRFYKSH KKMIIAAKNA QPQPNPVTEV HTIKLYRTPV 180 MDVGCNGCST LSETEGLNPI DHSKHLQLRE GDAHAVYNYF CRMKLTNPNF YYLMDLDDDG 240 RLRNVFWADA RSRAAYDYFC DTVAIDTTCL ANKYELPLIS FVGVNHHGQP VLLGCGFLGV 300 ESVDCYVWML RAWLKCMLGR PPQVFITDQC KPLQIAVSEV IPEARHCYCL SYIMQRVPEK 360 LGGLKGYEAI KRHLQKSIYD YLKIAEFETS WAEMIKRHEL GNNKWLQTLY EDRQNWVPVY 420 LKDTFFAGMI PIRENESLPA FFDGYVHKHT SFKEFVDKYD LALHRKRMKE VVADLESRMS 480 SFELKTRCNF EVQLCKVYTK DIFKRFQLEV EGMYSCFNTR QVNVSGPIIT YIVKERVEVE 540 GNEKEVRCYE VLYETTQVDI RCICSLFNYK GYLCRHALNV LNYNGVEVIP SRYILPRWCK 600 DFKRRYLLHQ GSSNIDVYDP AYWRNHLYNL ALPVAEEGAQ SEEHYKTTLQ ALEELLNKFH 660 LVDNTLNVT

Sequence ? help Back to Top

Protein Sequence Length: 669 aa Download sequence

MEMEEVCLNS EPVFDEGDEY DLEGGHAVGI GETKSKQVPP QPTVGLEFDS FDEAYDFYNV  60
YGKEQGFGIR VSNSWFRSKR KERYRAKLSC SSAGFKKKSE ANNPRPETRT GCPAMIVIKL  120
VDSQRWRIVE LELQHNHQVS PQIKRFYKSH KKMIIAAKNA QPQPNPVTEV HTIKLYRTPV  180
MDVGCNGCST LSETEGLNPI DHSKHLQLRE GDAHAVYNYF CRMKLTNPNF YYLMDLDDDG  240
RLRNVFWADA RSRAAYDYFC DTVAIDTTCL ANKYELPLIS FVGVNHHGQP VLLGCGFLGV  300
ESVDCYVWML RAWLKCMLGR PPQVFITDQC KPLQIAVSEV IPEARHCYCL SYIMQRVPEK  360
LGGLKGYEAI KRHLQKSIYD YLKIAEFETS WAEMIKRHEL GNNKWLQTLY EDRQNWVPVY  420
LKDTFFAGMI PIRENESLPA FFDGYVHKHT SFKEFVDKYD LALHRKRMKE VVADLESRMS  480
SFELKTRCNF EVQLCKVYTK DIFKRFQLEV EGMYSCFNTR QVNVSGPIIT YIVKERVEVE  540
GNEKEVRCYE VLYETTQVDI RCICSLFNYK GYLCRHALNV LNYNGVEVIP SRYILPRWCK  600
DFKRRYLLHQ GSSNIDVYDP AYWRNHLYNL ALPVAEEGAQ SEEHYKTTLQ ALEELLNKFH  660
LVDNTLNVT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1 family protein