PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0297211

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

TALE

Protein Properties

Length: 437aa MW: 48258.4 Da PI: 6.3099

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0297211	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	23.4	1e-07	386	419	21	54
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp++e++++L +++gL+ +q+ +WF N+R + RcHm_v2.0_Chr6g0297211 386 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 419 469*****************************87 PP
2	ELK	28.8	2.9e-10	340	361	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y+++++++++E++ RcHm_v2.0_Chr6g0297211 340 ELKHELKQGYKEKIVDIREEIL 361 9*******************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 437 aa Download sequence
MAYHNHLSGD LPLHHFTEQA QQQQQQSQSF VTDQPDPNSK STEPHHHPFQ TAPNWLNSAL 60 LRTQYAATTS GADASNAGGG STNFLNLHTA SDSTAASQAS NQWLSRPILQ RNHSDVIDDV 120 AAGAGDSMMA GAMSHDSADM KNDAALNNNN KSEGGVESGG GGGGGGDGVI NWQNARHKAE 180 ILAHPFYEPL LSAHVACLRI ATPVDQLPRI DAQLAQSQNV VAKYSGLSHG MVADDKELDQ 240 FMRHYVLLLC SFKEQLQQHV RVHAMEAVMA CWEIEQSLQS LTGVSPGEGT GATMSDDDDE 300 QVDSDANLFD GSMDGHDSMG FGPLIPTESE RSLMERVRQE LKHELKQGYK EKIVDIREEI 360 LRKRRAGKLP GDTTSVLKAW WQSHSKWPYP TEEDKARLVQ ETGLQLKQIN NWFINQRKRN 420 WHSNPSTSTV LKSKRKR

Sequence ? help Back to Top

Protein Sequence Length: 437 aa Download sequence

MAYHNHLSGD LPLHHFTEQA QQQQQQSQSF VTDQPDPNSK STEPHHHPFQ TAPNWLNSAL  60
LRTQYAATTS GADASNAGGG STNFLNLHTA SDSTAASQAS NQWLSRPILQ RNHSDVIDDV  120
AAGAGDSMMA GAMSHDSADM KNDAALNNNN KSEGGVESGG GGGGGGDGVI NWQNARHKAE  180
ILAHPFYEPL LSAHVACLRI ATPVDQLPRI DAQLAQSQNV VAKYSGLSHG MVADDKELDQ  240
FMRHYVLLLC SFKEQLQQHV RVHAMEAVMA CWEIEQSLQS LTGVSPGEGT GATMSDDDDE  300
QVDSDANLFD GSMDGHDSMG FGPLIPTESE RSLMERVRQE LKHELKQGYK EKIVDIREEI  360
LRKRRAGKLP GDTTSVLKAW WQSHSKWPYP TEEDKARLVQ ETGLQLKQIN NWFINQRKRN  420
WHSNPSTSTV LKSKRKR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	417	437	RKRNWHSNPSTSTVLKSKRKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25220.2	1e-177	TALE family protein