PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0291161

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 702aa MW: 77902.1 Da PI: 5.3508

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0291161	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.9	4.2e-14	479	525	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h +ErrRR+++N++f Lr+l+P +K++Ka+iL ++eY+k+L+ RcHm_v2.0_Chr6g0291161 479 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 525 7999********************8.....8***************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 702 aa Download sequence
MATPPPSSSR LRGMLQSAVQ SVQWTYSLFW QICPQQGMLI WADGYYNGAI KTRKTVQPME 60 VSSEEASLQR SQQLRELYDS LSAGETNQPA RRPCAALSPE DLTESEWFYL MCVSFSFPPG 120 VGLPGKAYTR RQHVWLTGAN EVDSKTFSRA ILAKSARVQT VVCIPLLDGV VELGTTDRVP 180 EDLAFVQHVK TFFVDHHHLP PPKPALSEHS TSNPATSSDH HPRFHSPHLT AIRNNAAANN 240 APPLHAAAQE DEEDEDEEED DQDEEGESDS EAETGRNGRP LAAAEGPNVP AAEPSELMQL 300 EMSEDIRLGS PDDASNNLDS DFHMLAVSQS ANAANQQRQA DSYRAESTRR WPQVQPPMIA 360 VQPPPSGPLA LEELTHDDTH YSETVSTILQ TQATRWTDSS SNDYVTYSTQ SAFAKWTSRA 420 DHHLLVPVEG TSQWLLKYIL FSVPFLHTKY RDENSPKSHD VDGSSRLRKG TSQDELSANH 480 VLAERRRREK LNERFIILRS LVPFVTKMDK ASILGDTIEY VKQLRKKIQD LEARNVHLED 540 DQRTRSAGEM QRSTSMKELR SGLTVTERSH VGPPGSDKRK LRIVEGSGGV AIAKPKMIEE 600 PTPPPPPPAP EPAPPTPMLT GTSLEVSIIE SDGLLELQCP YREGLLLDVM QTLRDLRIET 660 TVVQSSLNSG TFVAELRAKV GKKTTITEVK RAVNQVIPQS DS

Sequence ? help Back to Top

Protein Sequence Length: 702 aa Download sequence

MATPPPSSSR LRGMLQSAVQ SVQWTYSLFW QICPQQGMLI WADGYYNGAI KTRKTVQPME  60
VSSEEASLQR SQQLRELYDS LSAGETNQPA RRPCAALSPE DLTESEWFYL MCVSFSFPPG  120
VGLPGKAYTR RQHVWLTGAN EVDSKTFSRA ILAKSARVQT VVCIPLLDGV VELGTTDRVP  180
EDLAFVQHVK TFFVDHHHLP PPKPALSEHS TSNPATSSDH HPRFHSPHLT AIRNNAAANN  240
APPLHAAAQE DEEDEDEEED DQDEEGESDS EAETGRNGRP LAAAEGPNVP AAEPSELMQL  300
EMSEDIRLGS PDDASNNLDS DFHMLAVSQS ANAANQQRQA DSYRAESTRR WPQVQPPMIA  360
VQPPPSGPLA LEELTHDDTH YSETVSTILQ TQATRWTDSS SNDYVTYSTQ SAFAKWTSRA  420
DHHLLVPVEG TSQWLLKYIL FSVPFLHTKY RDENSPKSHD VDGSSRLRKG TSQDELSANH  480
VLAERRRREK LNERFIILRS LVPFVTKMDK ASILGDTIEY VKQLRKKIQD LEARNVHLED  540
DQRTRSAGEM QRSTSMKELR SGLTVTERSH VGPPGSDKRK LRIVEGSGGV AIAKPKMIEE  600
PTPPPPPPAP EPAPPTPMLT GTSLEVSIIE SDGLLELQCP YREGLLLDVM QTLRDLRIET  660
TVVQSSLNSG TFVAELRAKV GKKTTITEVK RAVNQVIPQS DS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	484	489	ERRRRE
2	485	490	RRRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09820.1	1e-104	bHLH family protein