PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0289601
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 293aa    MW: 31055.1 Da    PI: 6.258
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0289601genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.33.2e-09142186554
                             HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                     HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                             h+++Er RR+ri +++  L+el+P+ +      K + a++L + ++Y+k L
  RcHm_v2.0_Chr6g0289601 142 HSIAERLRRERIAERIRALQELVPSvN------KTDRAAMLDEIMDYVKFL 186
                             99***********************55......****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    
MANNPSEAQA DDFLEQILGL PNFASADANL TGGDGGLAGA PSSMMLQLSS GDGSGHMGGG  60
GYHGGVFPLG LSLEQGKAGF LKPEEASGSG KRFRDDVVDS RASAVKNVFH GQPISSTVAA  120
APHPPAMRPR VRARRGQATD PHSIAERLRR ERIAERIRAL QELVPSVNKT DRAAMLDEIM  180
DYVKFLRLQV KVLSMSRLGG AGAVAPLVTD IPLSSVEEEG GEGGRNQPAW DKWSNDGTER  240
QVAKLMEENV GAAMQFLQSK ALCIMPISLA SAIYHTQPPD TSSVVKSEMN PPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147152RLRRER
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.21e-106bHLH family protein