PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0288151
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 279aa    MW: 31810.2 Da    PI: 8.8602
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0288151genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding568.9e-1887134148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                             +g+WT+eEd  lv +++q+G g+W++ ++  g+ R++k+c++rw +yl
  RcHm_v2.0_Chr6g0288151  87 KGPWTPEEDHVLVSYIQQYGHGNWRALPKLAGLLRCGKSCRLRWTNYL 134
                             79******************************99************97 PP
2Myb_DNA-binding52.11.5e-16140185148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                             rg+++ eE+e +++++++lG++ W++Ia++++ gRt++++k+ w+++l
  RcHm_v2.0_Chr6g0288151 140 RGNFSREEEEAIINLHQMLGNR-WSAIAARLP-GRTDNEIKNVWHTHL 185
                             89********************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    
MKRVGSSFRI QLMPYFKFGL FVSYGTFNFG DVTRLAISIY IPLPTLISLS LLPSFYFPQC  60
PQRNSKNILQ PSRMVRAPCC EKMGLKKGPW TPEEDHVLVS YIQQYGHGNW RALPKLAGLL  120
RCGKSCRLRW TNYLRPDIKR GNFSREEEEA IINLHQMLGN RWSAIAARLP GRTDNEIKNV  180
WHTHLKKKLS IKQNSTTPEA QGQESEPEPK PENTSCYAKS ESFEYGPVSP PQCTTSSADD  240
SSSFTTSENN NCSANMGMKV DYEMNLPQAD ESFWSEIYK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.12e-74MYB family protein