PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr6g0286771 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | E2F/DP | ||||||||
Protein Properties | Length: 215aa MW: 23838.1 Da PI: 10.0713 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 58.1 | 1.4e-18 | 65 | 142 | 8 | 71 |
E2F_TDP 8 lltqkflkllek..seegivtlnevakeLvse.........dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 l+q+f+kl+ + s+++ ++l+e+ak L + +++k+RRiYDi+NVL++++liek + k+++rw g RcHm_v2.0_Chr6g0286771 65 SLAQNFVKLFVCtgSKSESISLDEAAKLL--PgvgdaqnvsVMRTKVRRIYDIANVLSSVKLIEKthtadTGKSAYRWLG 142 47899999887754777************..55688****9999************************999*******87 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence |
MATSSYLETP KTSRKSKNMY TWKGFGVVPN ALKVLREEGL DLTPIPVACN NNNNNPLDET 60 KREKSLAQNF VKLFVCTGSK SESISLDEAA KLLPGVGDAQ NVSVMRTKVR RIYDIANVLS 120 SVKLIEKTHT ADTGKSAYRW LGLNERRDGL NLNLEPNLEQ AKKRSFGTDL TNASSKRSKV 180 VEKRVQDQGE VENCNSDGCG AKEIRRATSF VLSLR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48160.1 | 6e-42 | E2F/DP family protein |