PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0285491

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 510aa MW: 56212.3 Da PI: 7.2528

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0285491	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	49.5	7.6e-16	301	347	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P + K +Ka++L +A+eY+ksLq RcHm_v2.0_Chr6g0285491 301 VHNLSERRRRDRINEKMRSLQELIPRC-----NKSDKASMLDEAIEYLKSLQ 347 6***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 510 aa Download sequence
MNYRVPEFEM EGDYSLPASS PRSRKSTMPE DEVMELLWQN GQVVMQSQTQ RSGHKKSKYD 60 AVIPEHTRPP AAQPPPVNQP QNPQLFMQED EMAAWLQCPL GDDDPFCAEL LYTDSRNAQS 120 NNTAANLPPI SPPPPRLPIH PPPPAPRRTE LPNFLHFSRM TNNNNNKSRY ESEAVGPSGS 180 KSVDSRFDAS SNNASGGGRG LAATRTMSFG AAASAGKDAV TCETSLTSST GDSSASGSLS 240 AEQMSIQKPP PPPLPVEDRK RKERVADDAE CQSEDVEFES GSGKKQTRGS SSTKRSRAAE 300 VHNLSERRRR DRINEKMRSL QELIPRCNKS DKASMLDEAI EYLKSLQLQV QMMSMGCGMV 360 PMMFPGVQQY MPMGMGMGMG MGMGMGMEMG MGMSRPMMPF PNVLAGSTMP TAPATAHMGP 420 RFPLPPFRMQ TMLPNDPSRV QATNQSEHML NSLGTQNQNQ SRVTNFADPY QHYFTPQQMR 480 MQLQQNQAMP QPSSSKPSSS MGPENQESHQ

Sequence ? help Back to Top

Protein Sequence Length: 510 aa Download sequence

MNYRVPEFEM EGDYSLPASS PRSRKSTMPE DEVMELLWQN GQVVMQSQTQ RSGHKKSKYD  60
AVIPEHTRPP AAQPPPVNQP QNPQLFMQED EMAAWLQCPL GDDDPFCAEL LYTDSRNAQS  120
NNTAANLPPI SPPPPRLPIH PPPPAPRRTE LPNFLHFSRM TNNNNNKSRY ESEAVGPSGS  180
KSVDSRFDAS SNNASGGGRG LAATRTMSFG AAASAGKDAV TCETSLTSST GDSSASGSLS  240
AEQMSIQKPP PPPLPVEDRK RKERVADDAE CQSEDVEFES GSGKKQTRGS SSTKRSRAAE  300
VHNLSERRRR DRINEKMRSL QELIPRCNKS DKASMLDEAI EYLKSLQLQV QMMSMGCGMV  360
PMMFPGVQQY MPMGMGMGMG MGMGMGMEMG MGMSRPMMPF PNVLAGSTMP TAPATAHMGP  420
RFPLPPFRMQ TMLPNDPSRV QATNQSEHML NSLGTQNQNQ SRVTNFADPY QHYFTPQQMR  480
MQLQQNQAMP QPSSSKPSSS MGPENQESHQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	306	311	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20180.2	2e-58	bHLH family protein