PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0282911
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 320aa    MW: 36818.6 Da    PI: 9.5775
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0282911genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.43.2e-2084145157
                             TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                Homeobox   1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                             r++R+t+t+eq+  Leel+++  ++p+a+++++ A++l    +++ ++V++WFqNrRa+e++
  RcHm_v2.0_Chr6g0282911  84 RSSRWTPTPEQIMHLEELYRSgIKTPTAQQIRQVAARLrnygRVEGKNVFYWFQNRRARERQ 145
                             689*****************99**************************************97 PP
2Wus_type_Homeobox108.73.3e-3585146364
       Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                             ++RWtPtpeQi+ Leely+sG++tP++++i++++a+L++yG++e+kNVfyWFQNr+aRerqk
  RcHm_v2.0_Chr6g0282911  85 SSRWTPTPEQIMHLEELYRSGIKTPTAQQIRQVAARLRNYGRVEGKNVFYWFQNRRARERQK 146
                             79***********************************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    
MMGSSGGCGD PKTRVLPEYF SIKAAYPQPL LTPKLSCTSN MTQIPLLPFN HHHQMVPVTS  60
NEQGRHSSDC FYSDKQPAAA APPRSSRWTP TPEQIMHLEE LYRSGIKTPT AQQIRQVAAR  120
LRNYGRVEGK NVFYWFQNRR ARERQKTRRE LMSMHQSDSK QQQQQALTKN TISSLRDKES  180
AGVEQQNRRT LPSFTLLTNQ KSSSVLQERM MSMVKSNSSR LLMEHIDSPG LTSNINKSAT  240
LVYRKLLDFH HYYDYDYGMV LLIAPNIYKE EEEEEESRET QTLKLFPLES DTLKGAKDTK  300
LPMSRTSTDT TSNFMADQYY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01500.15e-26WOX family protein