PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0281561

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 791aa MW: 90418.2 Da PI: 6.5487

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0281561	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	102	5.7e-32	85	176	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 fYn+YA++vGFs+r+s+s++s+r+g i++r+fvC keg+r+ ++k+ +++ +r+r++tr+gCka+l vk++++gkw+v+ +++eHn RcHm_v2.0_Chr6g0281561 85 FYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNLNEKRtkDREIKRPRTVTRVGCKASLSVKMQDSGKWVVSGFVKEHN 171 9*************************************998888545677889**************************** PP FAR1 87 Helap 91 Hel+p RcHm_v2.0_Chr6g0281561 172 HELVP 176 *86 PP

Sequence ? help Back to Top
Protein Sequence Length: 791 aa Download sequence
MDNEMIEFDI GLGGREGDDD FVEIEHPVED EEMVDSPLLG SASGSVNGVG FSGGSGEIYL 60 PEGDLLDLEP YDGMEFESEE AAKAFYNSYA RRVGFSTRVS SSRRSRRDGA IIQRQFVCAK 120 EGFRNLNEKR TKDREIKRPR TVTRVGCKAS LSVKMQDSGK WVVSGFVKEH NHELVPPDQV 180 HCLRSHRQIS GPAKTLIDTL QAAGMGPRRI MSALIKEYGG ISKVGFTEVD CRNYMRNNRQ 240 RSLDGDIQML LDYLRLMQAD NQNFFYAVQG DEDQAMGNVI WADPKAKTNY NYFGDTVTFD 300 TTYRSNRYRL PFAPITGINH HGQPVLFGCA FLINESEASF VWLFKTWLMA MSGRPPLSIT 360 TDHDPVIQSA IMQVFPQTRH RFCKWHIFKK CQEKLSHVFL QHPSFEADFH KCVNLTESIE 420 EFESCWLSLV DRYDLRDHEW LQTVYSARRQ WVPVYLRDTF FAEMSITQRS DSMNSYFDGY 480 VNASTNLSQF FKLYEKALES RNEKEVKADF DTMNTSPVLK TPSPMEKQAS EFYTKKIFMR 540 FQEELVGTLT FTASKGDDDG MIISYQVAKF GEDHKAYYVK LNVLDMMASC SCQMFEFSGL 600 LCRHVLAVFR VTNVLTLPSH YILKRWTRNA KSSVMLEERS SDVYTNYLES HTVRYNTLRH 660 EAFKFVDGAK SSETYDLALD ALKEAAKKVA HAIKNDGRNV MVNGHIRGNL AGGGSRANYT 720 IGDHDGSSGQ NLSEDDMDKK IRELTYELEC ANRKCEVYRA NLLSLLKDIE DHKLQLSIKV 780 ENIKISMKDG F

Sequence ? help Back to Top

Protein Sequence Length: 791 aa Download sequence

MDNEMIEFDI GLGGREGDDD FVEIEHPVED EEMVDSPLLG SASGSVNGVG FSGGSGEIYL  60
PEGDLLDLEP YDGMEFESEE AAKAFYNSYA RRVGFSTRVS SSRRSRRDGA IIQRQFVCAK  120
EGFRNLNEKR TKDREIKRPR TVTRVGCKAS LSVKMQDSGK WVVSGFVKEH NHELVPPDQV  180
HCLRSHRQIS GPAKTLIDTL QAAGMGPRRI MSALIKEYGG ISKVGFTEVD CRNYMRNNRQ  240
RSLDGDIQML LDYLRLMQAD NQNFFYAVQG DEDQAMGNVI WADPKAKTNY NYFGDTVTFD  300
TTYRSNRYRL PFAPITGINH HGQPVLFGCA FLINESEASF VWLFKTWLMA MSGRPPLSIT  360
TDHDPVIQSA IMQVFPQTRH RFCKWHIFKK CQEKLSHVFL QHPSFEADFH KCVNLTESIE  420
EFESCWLSLV DRYDLRDHEW LQTVYSARRQ WVPVYLRDTF FAEMSITQRS DSMNSYFDGY  480
VNASTNLSQF FKLYEKALES RNEKEVKADF DTMNTSPVLK TPSPMEKQAS EFYTKKIFMR  540
FQEELVGTLT FTASKGDDDG MIISYQVAKF GEDHKAYYVK LNVLDMMASC SCQMFEFSGL  600
LCRHVLAVFR VTNVLTLPSH YILKRWTRNA KSSVMLEERS SDVYTNYLES HTVRYNTLRH  660
EAFKFVDGAK SSETYDLALD ALKEAAKKVA HAIKNDGRNV MVNGHIRGNL AGGGSRANYT  720
IGDHDGSSGQ NLSEDDMDKK IRELTYELEC ANRKCEVYRA NLLSLLKDIE DHKLQLSIKV  780
ENIKISMKDG F

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1 family protein