PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0278471

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 629aa MW: 71260.3 Da PI: 4.9973

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0278471	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.6	9.7e-13	361	404	7	55
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +Er+RR+++N+++ eLr+l+P+ + Kl+ ++iL A+eY+ +Lq RcHm_v2.0_Chr6g0278471 361 VAERKRRKKLNDRLYELRSLVPNiS------KLDRSSILGDAIEYVMELQ 404 68*******************66......**************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 629 aa Download sequence
MNNIIMSNLI PRLRPLVGLK GWDFCVVWKL SEDQRFVEWM DCCCSGTEIT QDVGYEDHLL 60 FPVVSAVLPC RDTLLQHPRT RSCDFLSKMS SSVPLDSGIY AETLMSNQPS WLNFSDSSTY 120 SITNVEETVG TRVLMPIPGG LIELLVAKQV LEDQNVIDFI TEQYNISIEQ DHIGTSFGVN 180 LDTMIHDEIQ SKPVLLDHEQ MDPSNHVFCS GDNSAMNFLQ QFSHNLGSRM KNISYNVNSF 240 EDSSHAPFLS DKQMEHPFTN CSKKTGFDQA TEAMQRSMMM SETQATHHMH MQYMDQSLEP 300 GMDHELEQDA GNNDKDSNII NDDGGHATDL NSDCSDHDQI DAEDDAKYRR RNGKGQAKNL 360 VAERKRRKKL NDRLYELRSL VPNISKLDRS SILGDAIEYV MELQNQAKKL QDELDDDHDH 420 EEVRHVHEGA ANKNCGVTFQ HNSLQSEIDQ IQSGVDLKTE QNDHKAPNGF HLGTSGDGSV 480 SKQSPDSEVI HDHKTQQMEP QVEVAQIDGN QFFVKVFCEH KPGGFVRLME ALSSLSLEVT 540 NANVTSFRCL VSNVFIVEKK DSELVEADEV RDSLLELTRN PLKWRSEEMA KASEIGIGLD 600 NNHHHHPHHQ NLHNHHFSPF HLHHLPTEA

Sequence ? help Back to Top

Protein Sequence Length: 629 aa Download sequence

MNNIIMSNLI PRLRPLVGLK GWDFCVVWKL SEDQRFVEWM DCCCSGTEIT QDVGYEDHLL  60
FPVVSAVLPC RDTLLQHPRT RSCDFLSKMS SSVPLDSGIY AETLMSNQPS WLNFSDSSTY  120
SITNVEETVG TRVLMPIPGG LIELLVAKQV LEDQNVIDFI TEQYNISIEQ DHIGTSFGVN  180
LDTMIHDEIQ SKPVLLDHEQ MDPSNHVFCS GDNSAMNFLQ QFSHNLGSRM KNISYNVNSF  240
EDSSHAPFLS DKQMEHPFTN CSKKTGFDQA TEAMQRSMMM SETQATHHMH MQYMDQSLEP  300
GMDHELEQDA GNNDKDSNII NDDGGHATDL NSDCSDHDQI DAEDDAKYRR RNGKGQAKNL  360
VAERKRRKKL NDRLYELRSL VPNISKLDRS SILGDAIEYV MELQNQAKKL QDELDDDHDH  420
EEVRHVHEGA ANKNCGVTFQ HNSLQSEIDQ IQSGVDLKTE QNDHKAPNGF HLGTSGDGSV  480
SKQSPDSEVI HDHKTQQMEP QVEVAQIDGN QFFVKVFCEH KPGGFVRLME ALSSLSLEVT  540
NANVTSFRCL VSNVFIVEKK DSELVEADEV RDSLLELTRN PLKWRSEEMA KASEIGIGLD  600
NNHHHHPHHQ NLHNHHFSPF HLHHLPTEA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	349	369	RRRNGKGQAKNLVAERKRRKK
2	363	370	ERKRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	1e-136	bHLH family protein