PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0278441

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 550aa MW: 62457.4 Da PI: 5.3385

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0278441	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41	3.4e-13	304	347	7	55
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +Er+RR+++N+++ +Lr+l+P+ + K++Ka+iL+ A++++k+Lq RcHm_v2.0_Chr6g0278441 304 VAERKRRKKLNEKLYKLRSLVPNiS------KMDKASILKDAIDFVKDLQ 347 68*******************66......****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 550 aa Download sequence
MNMTMYNLII ERLRPLVGLK GWDYCVLWKL SEDQRFIEWI GCCCSGIDED TQNGGQELLF 60 PVYQVFQCRD TMQHSRTNSC DILSHLPSSM PLDSGIYAKT MMSNQPCWLN CSSGNRDSSA 120 MLERDGTLLL VPTAGGLMIE LFVSKDVSEN QQVIDFITAQ CNIWREQDTL ISASNTCSTN 180 TPVLSPSMAS LDPHDANLPY DITVDRIRLC SSESPSPLNF LQHVTSYNSD NRMKNSTSEC 240 NYDQGNSHEH SLDQPLENME QQGTLDYQDS IKPADHSVSD CSDQTDDTNY KTRNGKEPQS 300 KNLVAERKRR KKLNEKLYKL RSLVPNISKM DKASILKDAI DFVKDLQRQV KELQDVLEHN 360 SNEDGGAKRT FNSISGNHNN YQSEGLNQHG ISMANKPKSD NPQNGFRDSD HNTNEKGQQQ 420 MEPQVGVTQL DGNEFFVTVF CEQKPEGFVR LMEALDSLGL EVTNANVTSF RSLVSNVFKV 480 EKRDSEILQA DEVRDSLLEI TRNPSKGYWP EMAKASGNDG ALDYDHDKHH YHHHLHNYHS 540 PPYHVRHLYN

Sequence ? help Back to Top

Protein Sequence Length: 550 aa Download sequence

MNMTMYNLII ERLRPLVGLK GWDYCVLWKL SEDQRFIEWI GCCCSGIDED TQNGGQELLF  60
PVYQVFQCRD TMQHSRTNSC DILSHLPSSM PLDSGIYAKT MMSNQPCWLN CSSGNRDSSA  120
MLERDGTLLL VPTAGGLMIE LFVSKDVSEN QQVIDFITAQ CNIWREQDTL ISASNTCSTN  180
TPVLSPSMAS LDPHDANLPY DITVDRIRLC SSESPSPLNF LQHVTSYNSD NRMKNSTSEC  240
NYDQGNSHEH SLDQPLENME QQGTLDYQDS IKPADHSVSD CSDQTDDTNY KTRNGKEPQS  300
KNLVAERKRR KKLNEKLYKL RSLVPNISKM DKASILKDAI DFVKDLQRQV KELQDVLEHN  360
SNEDGGAKRT FNSISGNHNN YQSEGLNQHG ISMANKPKSD NPQNGFRDSD HNTNEKGQQQ  420
MEPQVGVTQL DGNEFFVTVF CEQKPEGFVR LMEALDSLGL EVTNANVTSF RSLVSNVFKV  480
EKRDSEILQA DEVRDSLLEI TRNPSKGYWP EMAKASGNDG ALDYDHDKHH YHHHLHNYHS  540
PPYHVRHLYN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	306	313	ERKRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	1e-121	bHLH family protein