PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0276821

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 607aa MW: 70343.6 Da PI: 7.6208

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0276821	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.4	3.5e-21	91	176	2	88
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnH 87 fYn+YA++ GFs+r sk +ks +g +r fvCs egkr ++k++ +++raetr gC+ak+k++ + + k+ v +++ +H+H RcHm_v2.0_Chr6g0276821 91 FYNQYAYRFGFSTRLSKAHKS-SSGLLRDRLFVCSAEGKRGRDKRN-PYVKSHRAETRFGCRAKMKIRYDLlSRKYSVVEFVADHTH 175 9**************9999.7888*************999.89999***************9************* PP FAR1 88 e 88 RcHm_v2.0_Chr6g0276821 176 V 176 5 PP

Sequence ? help Back to Top
Protein Sequence Length: 607 aa Download sequence
MDHKSPVPST PDVEATDSCD CQISSKLEFG SGIELNCSVE VENNEVGGSE EKSEEATKPI 60 ETTDSIHSRM RQELIPAVGM EFETEHDADA FYNQYAYRFG FSTRLSKAHK SSSGLLRDRL 120 FVCSAEGKRG RDKRNPYVKS HRAETRFGCR AKMKIRYDLL SRKYSVVEFV ADHTHVTTTP 180 SKTHLFRSHR KISLAQIVQA DMAYDSGINP KETLELLSRQ AGGREHLGFI PEDYKNYLRS 240 KRTREMKSGD TGGVLEYLQR MQLNDPNFVY AIQVDEDDLI TNIFWADAKM MVDYDYFGDV 300 VRFDTTYRKN KEGRPFAMFV GVNNHKQTLI FGAALLYDET AETFMWLFDT FANTMSGKKP 360 KSILTDQDLA MAKALASQWP ETHHRLCIWH IYQNAAKHLS SVFEQFKNFA EDFSSIIYDY 420 EDVEDFLIAW KKMLEKYNLQ ENKWLGRLFD LKEKWALVYG RETFCADITT TQRSESMNNS 480 IKKYVSYKYD LLRFFRHFQR LLDDRRYNES VANFKSSQTT PALSFPVKIL RNAAKVYTPA 540 VFKWFQVELC KAHDCTLKLF GEIGTMRIYE VTAHGKRFHH TVTFDSVDNN ISCTCKKFEF 600 AGILYHS

Sequence ? help Back to Top

Protein Sequence Length: 607 aa Download sequence

MDHKSPVPST PDVEATDSCD CQISSKLEFG SGIELNCSVE VENNEVGGSE EKSEEATKPI  60
ETTDSIHSRM RQELIPAVGM EFETEHDADA FYNQYAYRFG FSTRLSKAHK SSSGLLRDRL  120
FVCSAEGKRG RDKRNPYVKS HRAETRFGCR AKMKIRYDLL SRKYSVVEFV ADHTHVTTTP  180
SKTHLFRSHR KISLAQIVQA DMAYDSGINP KETLELLSRQ AGGREHLGFI PEDYKNYLRS  240
KRTREMKSGD TGGVLEYLQR MQLNDPNFVY AIQVDEDDLI TNIFWADAKM MVDYDYFGDV  300
VRFDTTYRKN KEGRPFAMFV GVNNHKQTLI FGAALLYDET AETFMWLFDT FANTMSGKKP  360
KSILTDQDLA MAKALASQWP ETHHRLCIWH IYQNAAKHLS SVFEQFKNFA EDFSSIIYDY  420
EDVEDFLIAW KKMLEKYNLQ ENKWLGRLFD LKEKWALVYG RETFCADITT TQRSESMNNS  480
IKKYVSYKYD LLRFFRHFQR LLDDRRYNES VANFKSSQTT PALSFPVKIL RNAAKVYTPA  540
VFKWFQVELC KAHDCTLKLF GEIGTMRIYE VTAHGKRFHH TVTFDSVDNN ISCTCKKFEF  600
AGILYHS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-112	FAR1 family protein