PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0276721
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family Dof
Protein Properties Length: 299aa    MW: 33218.2 Da    PI: 4.6051
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0276721genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof119.31.5e-373488660
                  zf-Dof  6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60
                             +cprC s+ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rkn++
  RcHm_v2.0_Chr6g0276721 34 PNCPRCASSNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRR 88
                            58***************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    
MFTAPVLEQM LHSQSGQLVM NQKPSWKPHV EIAPNCPRCA SSNTKFCYYN NYSLSQPRYF  60
CKGCRRYWTK GGSLRNVPVG GGCRKNRRGR SVRLSQADRV SLSYYRHNSS SGSGGDLSEQ  120
QSMEGGANGS DIDLAAVFAK FLNQDSSNEH DPNLVGSESI PDDVHEANAL SDHSQISSNP  180
EEDLLESVEL LEGLVLPDQD HQQLHEEDNI QNIMGNQHHH DLSIHEFGLQ GLLGDEDVFW  240
TDTTASLTSS TTSFTWQELD NSFPSNDDDH MKISTTTTNL CSDNWSSFDF SGLEVFSGS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21340.12e-42Dof family protein