PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr6g0270891 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | bHLH | ||||||||
Protein Properties | Length: 243aa MW: 27366.8 Da PI: 7.0887 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 46.9 | 4.8e-15 | 68 | 119 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ +hn+ Er RR++iN+ ++ Lr+l+P + ++kKls +++ ++ +YI +Lq RcHm_v2.0_Chr6g0270891 68 KKLNHNASERDRRKKINNLYSSLRSLVPAD---HAKKLSIPATVSRVLKYIPELQ 119 6789**************************...9******************998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence |
MLALSPPLFS TIGWPLEDHP ISHDHNYFSA ESSLLHFPTT LQPQFDKLDH STPSTAISGE 60 GNSSSMTKKL NHNASERDRR KKINNLYSSL RSLVPADHAK KLSIPATVSR VLKYIPELQQ 120 QVDGLIQKRD ELLSKISKQE NVILQEEKQV KSTARRSRSS LSAVSTTRLS DSEVAIQIST 180 LDSTHNFISR ILQSLEEDGL EILNASSFES SGGRVFYNLH LQVDMFHRLE CENLSEKLMS 240 FYA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56970.1 | 9e-57 | bHLH family protein |