PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0267581
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 292aa    MW: 32849.6 Da    PI: 6.0899
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0267581genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.78.2e-162168148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+WT  Ed ll+++++ +G g+W++ a++ g++R +k+c++rw++yl
  RcHm_v2.0_Chr6g0267581 21 KGPWTLAEDTLLINYIANHGEGHWNALAKCAGLKRKGKSCRLRWLNYL 68
                            79******************************99************97 PP
2Myb_DNA-binding44.14.8e-1474117146
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                             rg+ T +E++l+++++ ++G++ W++Ia++++ gRt+ ++k +w++
  RcHm_v2.0_Chr6g0267581  74 RGNLTSQEQLLILELHSKWGNR-WTKIAQHLP-GRTDDEIKTYWRT 117
                             7899******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    
MAGVANSVCT SPNEEENELR KGPWTLAEDT LLINYIANHG EGHWNALAKC AGLKRKGKSC  60
RLRWLNYLKP NTKRGNLTSQ EQLLILELHS KWGNRWTKIA QHLPGRTDDE IKTYWRTRVQ  120
KQVRQLNIES NSERFLDAVR CFWMPTLHQK MEQPSSLSLD PSSSSLSNSQ IAVAPSLSPQ  180
TYSVSSSPPC KVVSHVSDYS PIGNSSPSHS SLSSDSLISQ LPQIQEQPAS SSHAFEALND  240
NYYVDYDMKG FSFDPVSEMA SFDTSQFDCQ TAESDWIADN YMTDTLWSMQ GM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15359LKRKGKS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.12e-79MYB family protein