PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0265811

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB_related

Protein Properties

Length: 733aa MW: 80463.9 Da PI: 4.801

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0265811	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	33.6	8.8e-11	582	623	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +W +++ el++++++q+G++ + Ia+ ++ gRt++q+k+++ k RcHm_v2.0_Chr6g0265811 582 KWNEQDTELFYEGIEQFGSD-FGMIAQLFP-GRTRNQIKLKFKK 623 8*****************.*****.********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 733 aa Download sequence
MDDLDFEPTG PVRVAGRFRP KAKPKSTKVA CTAAASDLPN VVTENSIPVS STVSDTVPSA 60 ISVDVGELKL THPVGSSSEI SGSLELSGNN EHLCSSVLSF DGDRATKPSE SAAADTLQQS 120 VMVAASNGSD GSHSVFGKSA GENADIFSGL ECLDNFLTQT TSGTVPASGK SPDKVNGEKC 180 GAPTHCSIES SAFLACDVAD AQTVSDFCAT QDPVSCTEAA MSNKHGEFRL ETKEFEALDD 240 VSEAPISTGR HAGKFQPKLQ VKKGKENPNI PHSEVESTTL AACENFGTGE MDDSSLCTIP 300 PGDVHDHISP TFGDSIAPNP TPNFQENAES LAEITQLDEA VFGDAAHSEG VCGRGHKSGN 360 GKESTASNHP QKRKGSAADE AKDGTSSRKS RKRLPRQQVD EPGNNTNEDS FIAENSNDFD 420 GNEDKKHNTE RRKRAPRKSK IPASENEKPV QKRKRTKKAP DEPTEELTKK KFSHSTRRNR 480 RHVDKSLLEI PEDDIDPQKV PMKDLIRLRE YRERLAIKEA AKLKTPASNQ SAYDEFHNEE 540 ENFGFEQDRS SGEDQAGYRD RVSTSSSSFN YQSFMNKERP SKWNEQDTEL FYEGIEQFGS 600 DFGMIAQLFP GRTRNQIKLK FKKEDRQNPI RMNEAFRRHS KDNSKYVLVI NELQKVAREK 660 QESNADESND QEEVELTHDN DGGVTKPEWD KIEDMETDVA AEVQQEEAAV VHSPMKSDQI 720 DGGDSFSGWD DDF

Sequence ? help Back to Top

Protein Sequence Length: 733 aa Download sequence

MDDLDFEPTG PVRVAGRFRP KAKPKSTKVA CTAAASDLPN VVTENSIPVS STVSDTVPSA  60
ISVDVGELKL THPVGSSSEI SGSLELSGNN EHLCSSVLSF DGDRATKPSE SAAADTLQQS  120
VMVAASNGSD GSHSVFGKSA GENADIFSGL ECLDNFLTQT TSGTVPASGK SPDKVNGEKC  180
GAPTHCSIES SAFLACDVAD AQTVSDFCAT QDPVSCTEAA MSNKHGEFRL ETKEFEALDD  240
VSEAPISTGR HAGKFQPKLQ VKKGKENPNI PHSEVESTTL AACENFGTGE MDDSSLCTIP  300
PGDVHDHISP TFGDSIAPNP TPNFQENAES LAEITQLDEA VFGDAAHSEG VCGRGHKSGN  360
GKESTASNHP QKRKGSAADE AKDGTSSRKS RKRLPRQQVD EPGNNTNEDS FIAENSNDFD  420
GNEDKKHNTE RRKRAPRKSK IPASENEKPV QKRKRTKKAP DEPTEELTKK KFSHSTRRNR  480
RHVDKSLLEI PEDDIDPQKV PMKDLIRLRE YRERLAIKEA AKLKTPASNQ SAYDEFHNEE  540
ENFGFEQDRS SGEDQAGYRD RVSTSSSSFN YQSFMNKERP SKWNEQDTEL FYEGIEQFGS  600
DFGMIAQLFP GRTRNQIKLK FKKEDRQNPI RMNEAFRRHS KDNSKYVLVI NELQKVAREK  660
QESNADESND QEEVELTHDN DGGVTKPEWD KIEDMETDVA AEVQQEEAAV VHSPMKSDQI  720
DGGDSFSGWD DDF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	451	458	QKRKRTKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	2e-40	MYB_related family protein