PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0264701

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 423aa MW: 46899.5 Da PI: 5.7188

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0264701	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.7	5.5e-10	231	278	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq RcHm_v2.0_Chr6g0264701 231 SHSLAERVRREKISERMKYLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 278 8************************....999***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence
MNRALPEMLN CMNAPGGLVA GNCTDMTVLD RQRTRMRWQH DQFQQQPQQH QGYFGGNELN 60 GVFNHVPIEA SQVQNFQGLI GLGGDLGMGQ AVKPDLSSEN GWTELGYGSC GFEMNNISRT 120 FSCPPKVAAE TESNNAVPPA KISSPAGKES FKKRKADKAQ NNKAVAEDDS SDKRMKGCAE 180 EGDSKITEQN STKNNDRESS ADTSKENSKA SEVQKPDYIH VRARRGQATD SHSLAERVRR 240 EKISERMKYL QDLVPGCNKI TGKAGMLDEI INYVQSLQRQ VEFLSMKLAA VNPRLDFNID 300 DLFTKEMFPA NMANFPTIGM SSEMTSSAYL QFNHIQQLLQ CSGLENGITS PDSALLRRSI 360 STPISIPETF VDTSCFTQVQ PPTTWDADIQ NLFNVEFHQG RTAQFPSQPF TGSIEASNLK 420 MEM

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence

MNRALPEMLN CMNAPGGLVA GNCTDMTVLD RQRTRMRWQH DQFQQQPQQH QGYFGGNELN  60
GVFNHVPIEA SQVQNFQGLI GLGGDLGMGQ AVKPDLSSEN GWTELGYGSC GFEMNNISRT  120
FSCPPKVAAE TESNNAVPPA KISSPAGKES FKKRKADKAQ NNKAVAEDDS SDKRMKGCAE  180
EGDSKITEQN STKNNDRESS ADTSKENSKA SEVQKPDYIH VRARRGQATD SHSLAERVRR  240
EKISERMKYL QDLVPGCNKI TGKAGMLDEI INYVQSLQRQ VEFLSMKLAA VNPRLDFNID  300
DLFTKEMFPA NMANFPTIGM SSEMTSSAYL QFNHIQQLLQ CSGLENGITS PDSALLRRSI  360
STPISIPETF VDTSCFTQVQ PPTTWDADIQ NLFNVEFHQG RTAQFPSQPF TGSIEASNLK  420
MEM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34530.1	3e-67	bHLH family protein