PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0264521
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB_related
Protein Properties Length: 106aa    MW: 11717 Da    PI: 9.7725
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0264521genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.31.7e-081457344
                            SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
         Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                            +WT+   + + +a +++ ++   +W  +ar +g ++t++++k ++
  RcHm_v2.0_Chr6g0264521 14 SWTAKQNKAFEKALALYDKDtpdRWYNVARAVG-NKTPEEVKRHY 57
                            7********************************.**********9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    
MASSSMSSRN SGSSWTAKQN KAFEKALALY DKDTPDRWYN VARAVGNKTP EEVKRHYDLL  60
VADVKHIESG QVPFPDYRTS GGSGSGSGHG NIGHDEEKRM RSMKLN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.16e-37MYB_related family protein