PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr6g0259791 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | B3 | ||||||||
Protein Properties | Length: 375aa MW: 43623 Da PI: 10.5841 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 51.9 | 1.4e-16 | 16 | 109 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 ffkv +p +++++ l++p +f+++h +++ + tl+l+ + sW+v++ rk++g ++l++GW+eF ++ L +++f+vF + RcHm_v2.0_Chr6g0259791 16 FFKVILPGYSTEH--LRFPPRFLRKHivnKLS--KRATLKLKRSPEWSWKVEV--RKSGGDVYLKDGWQEFLRDACLGDKEFLVFIY 96 7888866666665..9**********975555..4558999999999999999..******************************** PP -SSSEE..EEEEE-S CS B3 85 dgrsefelvvkvfrk 99 +g+++f +kv++k RcHm_v2.0_Chr6g0259791 97 NGKMRF--SIKVYDK 109 999999..7777776 PP | |||||||
2 | B3 | 41.7 | 2.1e-13 | 292 | 373 | 12 | 97 |
HTT-EE--HHH.HTT..---..--SEEEEEETTS-EE.EEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 12 ksgrlvlpkkfaeeh..ggkkeesktltledesgrsW.evkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 +++++++pk+f e+ +g + + l++++g +W +vkl +++ +++++tkGW F+ an++k+g + F++ + e + vv+ RcHm_v2.0_Chr6g0259791 292 RLSQVYMPKPFYGENlsSG---NYEVIYLKNSEGTKWyKVKL--SRYHNTVFMTKGWGAFAVANQVKVGSLCQFQFLK--ENRIVVH 371 567899******9996533...3457********99867999..*******************************766..4556888 PP EE CS B3 96 vf 97 ++ RcHm_v2.0_Chr6g0259791 372 IL 373 76 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 375 aa Download sequence |
MVKISRNGVE EKKPSFFKVI LPGYSTEHLR FPPRFLRKHI VNKLSKRATL KLKRSPEWSW 60 KVEVRKSGGD VYLKDGWQEF LRDACLGDKE FLVFIYNGKM RFSIKVYDKN GCERMDFPDI 120 NTHQHTTSSR STKRPVRRPR KSSTGNSADK LKEVKEEEVD CNNTTDKCAS KSTETLRGRP 180 TKTTEEYTKR RLGRPTKPTS KSTKRPPVRA TKKTTESTKR PPVTPAKTTF ESTKRPRGRP 240 RKYPVTCKDS GKHIPNSEFD VLREVKEEEE DYQESGELFK SKLQYFTCKI NRLSQVYMPK 300 PFYGENLSSG NYEVIYLKNS EGTKWYKVKL SRYHNTVFMT KGWGAFAVAN QVKVGSLCQF 360 QFLKENRIVV HILNN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 234 | 242 | KRPRGRPRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35310.1 | 7e-15 | B3 family protein |