PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0256801
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 352aa    MW: 39589.5 Da    PI: 5.1174
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0256801genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.45.4e-18291299
                            EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                      B3  2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90
                            +kv++ps+v+   +l l+k+f+ +h   ++++++ +lede+g+++e k+ ++k +    l++GW++F  a++L +gD++vF+l+ +s+f
  RcHm_v2.0_Chr6g0256801  2 VKVMLPSHVSGGFWLGLSKTFCIKHL--PKQDTMFVLEDENGKKFETKYLVEKIG----LSGGWRGFSIAHKLLAGDVLVFHLVTESKF 84
                            699*********************95..337789***************555555....************************998999 PP

                            ..EEEEE-S CS
                      B3 91 elvvkvfrk 99
                              +v v+r+
  RcHm_v2.0_Chr6g0256801 85 --KVYVIRS 91
                            ..8887775 PP
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    
MVKVMLPSHV SGGFWLGLSK TFCIKHLPKQ DTMFVLEDEN GKKFETKYLV EKIGLSGGWR  60
GFSIAHKLLA GDVLVFHLVT ESKFKVYVIR SNGLGEVECA LGLVQLDADI RPVDSADTNA  120
CERAENENRE PKSVENPDGV IQRNKTAACN SKRGIVSDLF EDDTEDASCE VLEGIKLSES  180
IVPFDEVCGI ENFNVIYNGL IINPLFPKPL LTKYYELCCS QNSFLHEHLL EGLNYKLVAG  240
IISETTNIAD AIKACKITTL ESSFSTWDKT LQAGEMLGMN VSFLREQLEQ LASLASKLKT  300
CEEARLEREQ EEQEMRTRLA KLLEVKEKKD RLQSRISVKL MSRFKEVIDA PW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.15e-33B3 family protein