PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0254731
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 284aa    MW: 30719 Da    PI: 7.1374
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0254731genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.71.3e-051642021154
                             HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                     HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                             +RR+++ ++++ L++l+ +      +K + a++L +A+ YI+ L
  RcHm_v2.0_Chr6g0254731 164 KRREKLGERISALQQLVSPF-----GKTDTASVLHEAMGYIRFL 202
                             8******************8.....8****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    
MAGKEGFEVD QLGVIEGTSF SQLLYEVEHD VVGLCVDDHQ SQIFNYNTNS CSSLYSATDL  60
KTPKMLCFGD FQNKDRDNHH LGEIGFPEIS ISRPPAQKSG LTCSDSSSVS STSTKAATSS  120
SNSNSNKKRN GVAQEQQVQC ASTTTQAGQR SSKKPKTDKP AAGKRREKLG ERISALQQLV  180
SPFGKTDTAS VLHEAMGYIR FLHDQVQVLC SPYLKRLPSL PEGGGDGAEK KDEEARSNDL  240
RSRGLCLVPM ENTAHLANNN GADFWSPVTM ASNSNNKVSS STGY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19500.15e-43bHLH family protein