PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0253641

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 338aa MW: 37258.3 Da PI: 4.9155

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0253641	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.3	3.6e-10	262	302	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR++iN+++ L+ l+P+ +K++ +++Le+Av+Y+k Lq RcHm_v2.0_Chr6g0253641 262 RKRREKINERLRVLQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 302 9****************97.....8****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence
MEYVGAVSEG EWSSLSGMYA AEEADFMAQL LENSPLSSMP GMEVPDAFWQ GNEESTLHMS 60 GYYEGSHCSL ETTNSNFIAS SNESYYLSDS NQMLAINNNS TSSMSIDFGI GDVKTINTYL 120 IERDERDQCS NRETSKGNIE ESGGSRPEAV NLEKRRSQSS LSKINSMKRS QSSGNVQMNK 180 RSMKAKKSLR ITTSNNEDGN AGPNRQSSSS CCSEDDSIVC EVSGGFSPTS SLSPKDAAVP 240 DLNGKSRARR GSASDPQSLY ARKRREKINE RLRVLQNLVP NGTKVDISTM LEEAVHYVKF 300 LQLQIKLLSS DDMWMYAPIC YNGMDLGLDR KLPTPSQP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	262	267	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33880.1	1e-62	bHLH family protein