PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0252701
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB_related
Protein Properties Length: 299aa    MW: 33036.9 Da    PI: 10.1912
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0252701genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.71.7e-10556147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                            +++W +eE+  l+ +v ++G g W+tI +          R+  ++k++w+++
  RcHm_v2.0_Chr6g0252701  5 KQKWNAEEEAALKAGVVKHGAGKWRTILKDPEfarilYLRSNVDLKDKWRNL 56
                            79***********************************88***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    
MGAPKQKWNA EEEAALKAGV VKHGAGKWRT ILKDPEFARI LYLRSNVDLK DKWRNLSVMV  60
NGWGSRDKCK TVTRRMPQVP KQEDSSMALS AGQSDEEVMD AKPMTASSDS QQVSAPKRSI  120
VRLDDLIMEA ITSLKDPGGS NKTTIATYIE EQYWAPPDFK RLLSAKLKFL TASGKLIKVK  180
RRYRIAPTPT FSEKRRNSSM FLFEGRQRAS PKFDKDDGTM LMKTQIDLEL AKMRTMTSQE  240
AAAAAARAVA EAEAAIAEAE EAAREAEAAE ADAEAAQAFA DAAMKTLKGR NPAKMMSRA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.12e-98MYB_related family protein