PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0251121

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 845aa MW: 96336.4 Da PI: 7.8245

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0251121	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	53.9	5.9e-17	71	164	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkek.dgkwevtkl 81 kfY+ Y+ +GF++r++k + +g++ +r +vCsk+g++++ +++ ++++r +r +tr +C a ++v+ +k + ++v+++ RcHm_v2.0_Chr6g0251121 71 KFYEIYSAALGFRLRRQKCDRG-LSGTVLRRVWVCSKQGQKNKPRNNqvrglSSNSRPPRHSTREKCMAAFVVRYSKeLDAYYVKSF 156 6***************9998.8888*********999999889999899999*************99899*** PP FAR1 82 eleHnHel 89 +eH+H+l RcHm_v2.0_Chr6g0251121 157 TTEHTHDL 164 ****98 PP

Sequence ? help Back to Top
Protein Sequence Length: 845 aa Download sequence
MSNDGNIIDV ESGEEDDSST QDCNMETEDN ETTEETYGAD GPFEYNGKNF RELTVKDFDG 60 TYFKTIEDAE KFYEIYSAAL GFRLRRQKCD RGLSGTVLRR VWVCSKQGQK NKPRNNQVRG 120 LSSNSRPPRH STREKCMAAF VVRYSKELDA YYVKSFTTEH THDLPKPNKV QSLLSHCVGK 180 KVDLAEAVAM PKAKESIKTS AVHEHHPSGG NECVASTKEL DLAHAVAVRK AKESINTSAA 240 YVYRPSGGNE FVGLTKESDL EQGVAMRKGS INSTAASQHM VEPAGGHAFV SLTNRSDLVQ 300 TVAMQKESIT TSSAYEYIVH PAGGYEFVDL MKRELYNSID IERREALLNG DAQVAIAFMN 360 ARAAEDPEFF CKFSVDERGR LGNLFWRDSC SLLDYTRFGD VLIFDCTFKT NIYQRPLAVF 420 VGANNHRGTV LFGSAILVDD TIDTYKWALQ TFLGAMKDKK PISVLTDRDD KIQNAVVEVF 480 PKARHRLCSW HIEKNLATII KDPDVVKAFT QFLYNAIPPD EWDLGWKSMV ETYGLQDNPW 540 INMMYQRRKR WAEAFFKGHF FGGMSSMQRC QGIHRNLESA LGKYDRFCEY IPRMDKTLRK 600 MRNNISVDDL KCENSKPVII THMRSLEQQI AEIFTHDIYL LIMHQIDWER KYIITKSEPY 660 AQGDGKVFHL TQYDLPHRHW TVNYHHNISK VWFLCSCKLF QSDGIPCAHI FSVMKAELIL 720 KLPDSLVLKR WTMDVGKPVN LHNLSDRNLQ MVRYASLASE IKNICFPASM TEGGTKKMKC 780 EIAKLAKPAH DRTESQNHSL LQNLIHRHQL HVGSDAHSFT GFSVGINAEH YARSLPPGEF 840 RTYFY

Sequence ? help Back to Top

Protein Sequence Length: 845 aa Download sequence

MSNDGNIIDV ESGEEDDSST QDCNMETEDN ETTEETYGAD GPFEYNGKNF RELTVKDFDG  60
TYFKTIEDAE KFYEIYSAAL GFRLRRQKCD RGLSGTVLRR VWVCSKQGQK NKPRNNQVRG  120
LSSNSRPPRH STREKCMAAF VVRYSKELDA YYVKSFTTEH THDLPKPNKV QSLLSHCVGK  180
KVDLAEAVAM PKAKESIKTS AVHEHHPSGG NECVASTKEL DLAHAVAVRK AKESINTSAA  240
YVYRPSGGNE FVGLTKESDL EQGVAMRKGS INSTAASQHM VEPAGGHAFV SLTNRSDLVQ  300
TVAMQKESIT TSSAYEYIVH PAGGYEFVDL MKRELYNSID IERREALLNG DAQVAIAFMN  360
ARAAEDPEFF CKFSVDERGR LGNLFWRDSC SLLDYTRFGD VLIFDCTFKT NIYQRPLAVF  420
VGANNHRGTV LFGSAILVDD TIDTYKWALQ TFLGAMKDKK PISVLTDRDD KIQNAVVEVF  480
PKARHRLCSW HIEKNLATII KDPDVVKAFT QFLYNAIPPD EWDLGWKSMV ETYGLQDNPW  540
INMMYQRRKR WAEAFFKGHF FGGMSSMQRC QGIHRNLESA LGKYDRFCEY IPRMDKTLRK  600
MRNNISVDDL KCENSKPVII THMRSLEQQI AEIFTHDIYL LIMHQIDWER KYIITKSEPY  660
AQGDGKVFHL TQYDLPHRHW TVNYHHNISK VWFLCSCKLF QSDGIPCAHI FSVMKAELIL  720
KLPDSLVLKR WTMDVGKPVN LHNLSDRNLQ MVRYASLASE IKNICFPASM TEGGTKKMKC  780
EIAKLAKPAH DRTESQNHSL LQNLIHRHQL HVGSDAHSFT GFSVGINAEH YARSLPPGEF  840
RTYFY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-67	FAR1 family protein