PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0246251

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 324aa MW: 36428.4 Da PI: 8.4894

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0246251	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.9	1.6e-12	146	193	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h ++Er+RR+++ ++f L ++P + kK +Ka++L ++YIk+Lq RcHm_v2.0_Chr6g0246251 146 QDHIIAERKRREKLSQRFIALSAMVPGL-----KKTDKASVLGDSIKYIKQLQ 193 6799**********************.....9****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence
MEDPFFVNQW HMNSLDELSM LPLSAAFGEN LQQSHCHPIL NHKSSTNTSL SSIDRPMKQF 60 KPNNWSPSNH QFASLPNLLS FVNSYNTNQV GVVKPKEETA VCSKNINHFP SDILVSQGSF 120 GNQNSSLKAS QGTNRISTNT RLSQTQDHII AERKRREKLS QRFIALSAMV PGLKKTDKAS 180 VLGDSIKYIK QLQEKVKTLE EQTRVKKMES VVSVKRSQLI ANDDNSSSDD NNSSVSFEET 240 LPEIEARFCD NNVMIRVHCE KRKGVVEKTI AEVEKLQLKL INSSVMTFGS SVLDVTIVAQ 300 MEVEFCLSVK DVVKNLRSAF DLFM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	152	157	ERKRRE
2	153	158	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	2e-61	bHLH family protein