PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0246161

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 817aa MW: 92921.5 Da PI: 8.137

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0246161	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	49.9	1e-15	78	224	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......................................... 47 fY Y+ +GFs rk+k ++ + + +++r++vCskeg+r+++ k RcHm_v2.0_Chr6g0246161 78 FYAYYSLAMGFSFRKEKLCRN-TAQVVVRRQLVCSKEGERKKRGKPdpsfaseiiscaqnlspphgtkqvckrktvnqkpivedadr 163 9***************999.7777*************9999************************************ PP FAR1 48 .................tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 ++++ +r+ tr +C+a+++ ++ k +g+++v ++ +eHnH+l+ RcHm_v2.0_Chr6g0246161 164 rsmkrsgkqsgedehgkKRQRPPQRNITRGNCQARITARRCKeSGVFRVVQFITEHNHALV 224 ********9976555555699***********999**************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 817 aa Download sequence
MDESGMRFSE PNYHGWSVDE DDFSDEYEEL FSDEEASQSA NMDENLDCLH FNGKKYEDLR 60 SSDMIGVEFS SVEAVDTFYA YYSLAMGFSF RKEKLCRNTA QVVVRRQLVC SKEGERKKRG 120 KPDPSFASEI ISCAQNLSPP HGTKQVCKRK TVNQKPIVED ADRRSMKRSG KQSGEDEHGK 180 KRQRPPQRNI TRGNCQARIT ARRCKESGVF RVVQFITEHN HALVTTEFVP FLRSHRKVRD 240 HDVAQVTALK KVSVGTCRAY ELLVHQAGGH EFVGFLIKDL YNKMDSERKE LMVDGDAQST 300 ISFMNLKASK EAEFFCLFSV DAEGRLGNMF WRDTKSLADY NNFGDVLIID STYKTNIYGK 360 PLAIFVGANN HRATVLFACA LLADESEDTY NWVVTAFLTS MRGKKPISVL TDGDEALRNA 420 VVNLIPEARH RLCAWHIAKN VVKNVRDADV QRDFCHLIFA GLGVDEWEKS WHYMVTMNGL 480 QDNKWVAAMY NKRERWAEAF FRNHFFSGMC TTQRCEAMHR NLKGGVGRYM RLCEVLPRMD 540 KTIECIRFNG LNDDFKSMNS HPVIGSHMRC IQQQVSVRFT HDVFLLIKDQ ILFESKFLVA 600 DRVRYENQGS TLHLVTQYGK PERTWHVTHY QGKPDLSFVC SCHLFESDGI PCCHIFTVIK 660 TMNMTTLPES LVNQRWTKQA CTKDTSTLSS GIMPAKDLQL ARYGQMMGDC AQICHSASFS 720 DEAYEEITNC LSRLMVRSKT FKRCKDSQPP ETVDGLQPNV IRDPNVCKTK GTHSRHSTSV 780 EVERDQPGGR GCGFCSRPGH NVRTCALLAA QNGGGKG

Sequence ? help Back to Top

Protein Sequence Length: 817 aa Download sequence

MDESGMRFSE PNYHGWSVDE DDFSDEYEEL FSDEEASQSA NMDENLDCLH FNGKKYEDLR  60
SSDMIGVEFS SVEAVDTFYA YYSLAMGFSF RKEKLCRNTA QVVVRRQLVC SKEGERKKRG  120
KPDPSFASEI ISCAQNLSPP HGTKQVCKRK TVNQKPIVED ADRRSMKRSG KQSGEDEHGK  180
KRQRPPQRNI TRGNCQARIT ARRCKESGVF RVVQFITEHN HALVTTEFVP FLRSHRKVRD  240
HDVAQVTALK KVSVGTCRAY ELLVHQAGGH EFVGFLIKDL YNKMDSERKE LMVDGDAQST  300
ISFMNLKASK EAEFFCLFSV DAEGRLGNMF WRDTKSLADY NNFGDVLIID STYKTNIYGK  360
PLAIFVGANN HRATVLFACA LLADESEDTY NWVVTAFLTS MRGKKPISVL TDGDEALRNA  420
VVNLIPEARH RLCAWHIAKN VVKNVRDADV QRDFCHLIFA GLGVDEWEKS WHYMVTMNGL  480
QDNKWVAAMY NKRERWAEAF FRNHFFSGMC TTQRCEAMHR NLKGGVGRYM RLCEVLPRMD  540
KTIECIRFNG LNDDFKSMNS HPVIGSHMRC IQQQVSVRFT HDVFLLIKDQ ILFESKFLVA  600
DRVRYENQGS TLHLVTQYGK PERTWHVTHY QGKPDLSFVC SCHLFESDGI PCCHIFTVIK  660
TMNMTTLPES LVNQRWTKQA CTKDTSTLSS GIMPAKDLQL ARYGQMMGDC AQICHSASFS  720
DEAYEEITNC LSRLMVRSKT FKRCKDSQPP ETVDGLQPNV IRDPNVCKTK GTHSRHSTSV  780
EVERDQPGGR GCGFCSRPGH NVRTCALLAA QNGGGKG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	163	169	RRSMKRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-79	FAR1 family protein