PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0245181
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 339aa    MW: 37676.2 Da    PI: 6.4122
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0245181genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH314.4e-1060109154
                             CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                     HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                             r++ +  rE+ RRdr+N+ f eL ++l ++     +K++Ka+iL  +++ +k+L
  RcHm_v2.0_Chr6g0245181  60 RKMQKADREKLRRDRLNEHFMELGKVLDPD----RPKNDKATILADTIQVLKDL 109
                             5778899******************99997....79***************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    
MQTLMDQLKP ESFIQTPPNP FPSSTEFPQP SFDSLIPSNR SIPNSSQMPE GEVKDGLAAR  60
KMQKADREKL RRDRLNEHFM ELGKVLDPDR PKNDKATILA DTIQVLKDLS SEVDKLKTEC  120
TSLTEESREL TNEKNELREE KASLKTDIEN LNAQYQQRLR AMFPWGAVDH SVVMAPPSYP  180
FPMPMPMPPG SIPMHPHMQP YPYFGNQNPG VIPNPCSTFV PYITPNTLVE QQPTPYVSPV  240
VHPATQSHVS VKQDSRNKSS GTSRIDKSED SNDVTTELEL KTPGSTADQD LSPVKRKSQK  300
SARKELKVTE GTSSSRCSSS HSAQGSSSNS VVGGRKDDD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.23e-87bHLH family protein