PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0077341

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 437aa MW: 48210.3 Da PI: 6.5889

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0077341	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.3	1.1e-12	372	417	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++L +Av+YIk+Lq RcHm_v2.0_Chr5g0077341 372 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVDYIKDLQ 417 689*******************7....688***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 437 aa Download sequence
MESDLQQPHH KTQQHMNSSL LRYRSAPSSY FANVLDTEFN EPFFNRATSP ETERILARFM 60 SSQGGDGGGT EEIVPHQKVV TDQQPQFLVP KVDNEAAMIQ QQQQQQQQQQ QEQQQQQQQQ 120 QQQSHINNYT SQGFYQIPSS KPPLPNQNMA SSNEGASAAA YPMGSNQLPP MKTGGVTHSN 180 LIRHSSSPAG LFANINIDVA GYAALRGMGN FGVSNSTNEE ASFSPASRLK NFSSGPPPST 240 SGIMSPISQI GEKRMRSNNQ EPTGSGGRFS EGHSNNYVSG FPIGSWEDSS LLGDDIIGST 300 GFRDDDDDVK TITGLSASET QNMEARSRPL AHHLSLPKTS AEMAAIENFL QFQDSVPCKI 360 RAKRGCATHP RSIAERVRRT RISERMRKLQ ELVPNMDKQT NTADMLDLAV DYIKDLQTEV 420 QTLSEARAKC TCSIKQQ

Sequence ? help Back to Top

Protein Sequence Length: 437 aa Download sequence

MESDLQQPHH KTQQHMNSSL LRYRSAPSSY FANVLDTEFN EPFFNRATSP ETERILARFM  60
SSQGGDGGGT EEIVPHQKVV TDQQPQFLVP KVDNEAAMIQ QQQQQQQQQQ QEQQQQQQQQ  120
QQQSHINNYT SQGFYQIPSS KPPLPNQNMA SSNEGASAAA YPMGSNQLPP MKTGGVTHSN  180
LIRHSSSPAG LFANINIDVA GYAALRGMGN FGVSNSTNEE ASFSPASRLK NFSSGPPPST  240
SGIMSPISQI GEKRMRSNNQ EPTGSGGRFS EGHSNNYVSG FPIGSWEDSS LLGDDIIGST  300
GFRDDDDDVK TITGLSASET QNMEARSRPL AHHLSLPKTS AEMAAIENFL QFQDSVPCKI  360
RAKRGCATHP RSIAERVRRT RISERMRKLQ ELVPNMDKQT NTADMLDLAV DYIKDLQTEV  420
QTLSEARAKC TCSIKQQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51140.1	3e-66	bHLH family protein