PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0077201
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family AP2
Protein Properties Length: 553aa    MW: 60781.5 Da    PI: 6.6168
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0077201genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.62.3e-11171227155
                     AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                             s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  RcHm_v2.0_Chr5g0077201 171 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 227
                             57*******************5444.2455536655.779999**************98 PP

2AP247.16e-15272321355
                     AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             y+GV+++++ grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  RcHm_v2.0_Chr5g0077201 272 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 321
                             9***************988532...5************************998 PP

Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    
MGSMNSNNWL SFPLSPANSS LPSQLHPSHS HQFSLGLVSD SMDNPFQNHE WNMINTQGSS  60
EVPKVADFLG VGKSDNQSDL VAYNEINANE SVTDYIFPNI NNAIVPVQNS VVGTSSNYDF  120
QENSNSLQSL TLSMGSGKGS STCETSADNT STTTVEAPPR RALDTFGQRT SIYRGVTRHR  180
WTGRYEAHLW DNSCRREGQS RKGRQGGYDK EEKAARAYDL AALKYWGTST TTNFPISNYE  240
KEVEEMKNCT RQEFVASIRR KSSGFSRGAS MYRGVTRHHQ HGRWQARIGR VAGNKDLYLG  300
TFSTEEEAAE AYDIAAIKFR GLNAVTNFDM SRYDVKSILE SNTLPIGGGA AKRLKEAQAL  360
ETSRKREEMI ALGSTFQYAA GSSSSASSAA RNLQAYSLMQ QQPQSAYDQT LLSLQNHDIS  420
QYTHHDPSAY QNYIQTQIQL QQQSSNSYNI HQQSQSPHQY YNTYLQSTHP ALLQGLMDMG  480
TASTTVMDNS AGGYLGHNGL GMASNSTTTN GVGSAEELAL VKVDYDMPSG GYGSWSGGSV  540
QGSNPGVFTM WND
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.10.0AP2 family protein