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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr5g0077201 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | AP2 | ||||||||
Protein Properties | Length: 553aa MW: 60781.5 Da PI: 6.6168 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 35.6 | 2.3e-11 | 171 | 227 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +e+Aa+a++ a++k++g RcHm_v2.0_Chr5g0077201 171 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 227 57*******************5444.2455536655.779999**************98 PP | |||||||
2 | AP2 | 47.1 | 6e-15 | 272 | 321 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t+eeAa+a++ a+ k++g RcHm_v2.0_Chr5g0077201 272 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 321 9***************988532...5************************998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 553 aa Download sequence |
MGSMNSNNWL SFPLSPANSS LPSQLHPSHS HQFSLGLVSD SMDNPFQNHE WNMINTQGSS 60 EVPKVADFLG VGKSDNQSDL VAYNEINANE SVTDYIFPNI NNAIVPVQNS VVGTSSNYDF 120 QENSNSLQSL TLSMGSGKGS STCETSADNT STTTVEAPPR RALDTFGQRT SIYRGVTRHR 180 WTGRYEAHLW DNSCRREGQS RKGRQGGYDK EEKAARAYDL AALKYWGTST TTNFPISNYE 240 KEVEEMKNCT RQEFVASIRR KSSGFSRGAS MYRGVTRHHQ HGRWQARIGR VAGNKDLYLG 300 TFSTEEEAAE AYDIAAIKFR GLNAVTNFDM SRYDVKSILE SNTLPIGGGA AKRLKEAQAL 360 ETSRKREEMI ALGSTFQYAA GSSSSASSAA RNLQAYSLMQ QQPQSAYDQT LLSLQNHDIS 420 QYTHHDPSAY QNYIQTQIQL QQQSSNSYNI HQQSQSPHQY YNTYLQSTHP ALLQGLMDMG 480 TASTTVMDNS AGGYLGHNGL GMASNSTTTN GVGSAEELAL VKVDYDMPSG GYGSWSGGSV 540 QGSNPGVFTM WND |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51190.1 | 0.0 | AP2 family protein |