PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0075031
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 325aa    MW: 36099.6 Da    PI: 6.9401
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0075031genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.19.5e-191461148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            rg WT+eEd +l  +++q+G+++W++I++  g+ R++k+c++rw +yl
  RcHm_v2.0_Chr5g0075031 14 RGQWTPEEDNKLSSYIAQHGTRNWRLIPKNAGLQRCGKSCRLRWTNYL 61
                            89********************************************97 PP
2Myb_DNA-binding46.31e-1468110246
                             SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                             g +++ E++ +v+++   G++ W++Ia+ ++ gRt++++k++w++
  RcHm_v2.0_Chr5g0075031  68 GQFSEVEEQTIVKLHSVVGNR-WSLIAAQLP-GRTDNDVKNHWNT 110
                             789******************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    
MGRIPCCEKD NVKRGQWTPE EDNKLSSYIA QHGTRNWRLI PKNAGLQRCG KSCRLRWTNY  60
LRPDLKHGQF SEVEEQTIVK LHSVVGNRWS LIAAQLPGRT DNDVKNHWNT KLKKKLSGMG  120
IDPVTHKPFS HLMAEIATTL APPNVANLAE AALGCFKDEM LHLLTKKPID FQFQHSNTTP  180
GNRTATYINN KEEKDDTIEK IKIGLSRAMQ EPDMLHSQKS WDPTGATSAN LTGNCSAFPL  240
HSISGFQYGL STFGNEGGGS PWSQSMCTGS TCTGADQQGH LHDKLDEEIG EESEGGKELR  300
NGSNIFNSDS ILWDLPSDDL MNPIV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56110.11e-116MYB family protein