PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0073101

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB_related

Protein Properties

Length: 653aa MW: 71856.8 Da PI: 5.1031

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0073101	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	33.7	8.3e-11	603	651	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 +rW+ E++ l +v+++G g+Wk+I Rt+ ++k++w++ RcHm_v2.0_Chr5g0073101 603 KRWSLHEEDTLRTGVQKYGRGNWKLILDAYRdvfVERTEVDLKDKWRNM 651 59******************************99*********95 PP

Sequence ? help Back to Top
Protein Sequence Length: 653 aa Download sequence
MDLDVDVSRW VLELLLRDRD KESVAKRVLA AVPLSNQDWR LKKTVLLRTI ESEVLDEASV 60 TEAILESLES IEALDRGQGI PVTDSMRAAY CAVATECTVK FLVCFGGKPS GKYMEAVDRI 120 WRGRVRVLEE SEGCELVSGE LRERRDEVEA GIWDVKVSKK LASMNSRNDA LRLVAAYVKE 180 ALAMLGPPFI AWAVRFNMQK GSLGMEGDEV AVENDGNVGD GCEVQVRMAN GAELEVQTAN 240 GADLEVQRAN GVELGDGSKL EVSGANVRDA SELEAQRGAN VNSGSEQAQR ANGVTVNSGS 300 EQEAQRANVN SGSELEAQRV NGANDVSDRS EQEAQRPNGA NVSDASEQEA HDTNVVGVGR 360 SQRNGHRGVL SLEPATKEKE TPRSRALRRR HGPVKIRDAE DVGMEASAGI YNSVSSAEVR 420 KVQEELKSSV LALQAVVTDP LPYALRVSEI VRSELGMKPV DHVSEENGGA ANPSVERNSE 480 PDQSNNDNHG NQTSHQNDVP QPSEKENDGP NLSVDRGKGM EYVGTGDVNP GNPSCSYQNN 540 ISRAGLMERN STAHTYEWED SLGMSPERTN SKGRLHLPSP KRNAVSPLKK YEDKRFSKRR 600 KVKRWSLHEE DTLRTGVQKY GRGNWKLILD AYRDVFVERT EVDLKDKWRN MTK

Sequence ? help Back to Top

Protein Sequence Length: 653 aa Download sequence

MDLDVDVSRW VLELLLRDRD KESVAKRVLA AVPLSNQDWR LKKTVLLRTI ESEVLDEASV  60
TEAILESLES IEALDRGQGI PVTDSMRAAY CAVATECTVK FLVCFGGKPS GKYMEAVDRI  120
WRGRVRVLEE SEGCELVSGE LRERRDEVEA GIWDVKVSKK LASMNSRNDA LRLVAAYVKE  180
ALAMLGPPFI AWAVRFNMQK GSLGMEGDEV AVENDGNVGD GCEVQVRMAN GAELEVQTAN  240
GADLEVQRAN GVELGDGSKL EVSGANVRDA SELEAQRGAN VNSGSEQAQR ANGVTVNSGS  300
EQEAQRANVN SGSELEAQRV NGANDVSDRS EQEAQRPNGA NVSDASEQEA HDTNVVGVGR  360
SQRNGHRGVL SLEPATKEKE TPRSRALRRR HGPVKIRDAE DVGMEASAGI YNSVSSAEVR  420
KVQEELKSSV LALQAVVTDP LPYALRVSEI VRSELGMKPV DHVSEENGGA ANPSVERNSE  480
PDQSNNDNHG NQTSHQNDVP QPSEKENDGP NLSVDRGKGM EYVGTGDVNP GNPSCSYQNN  540
ISRAGLMERN STAHTYEWED SLGMSPERTN SKGRLHLPSP KRNAVSPLKK YEDKRFSKRR  600
KVKRWSLHEE DTLRTGVQKY GRGNWKLILD AYRDVFVERT EVDLKDKWRN MTK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58340.2	3e-18	MYB_related family protein