PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0068891

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 515aa MW: 57901.7 Da PI: 7.9229

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0068891	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.1	7.5e-17	146	192	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd +l ++vkq+G + W+ Ia+++ gR +kqc++rw+++l RcHm_v2.0_Chr5g0068891 146 KGQWTDEEDRKLMRLVKQYGVRKWAQIAEKLV-GRAGKQCRERWHNHL 192 799***************************.***********97 PP
2	Myb_DNA-binding	58.2	1.9e-18	198	240	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++WT+eE+++lv+a+++ G++ W+ Ia++++ gRt++ +k++w+ RcHm_v2.0_Chr5g0068891 198 KDSWTEEEEKILVEAHAEVGNR-WAEIAKRIP-GRTENAIKNHWN 240 679*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 515 aa Download sequence
MEGEDGAASD HLHHHHGVYG FQNNHIQTPH QHHNQLFRPG PPLKAIDRFL WSQNNAKNKE 60 RLVSSNGFSS FGGAMGDLQA CSNWPPSSLR EASLDELLFL DHGEAMTWPP EKIQNPNMGF 120 KEDQVKVGSK GVGKKAKKGS SVPLIKGQWT DEEDRKLMRL VKQYGVRKWA QIAEKLVGRA 180 GKQCRERWHN HLRPDIKKDS WTEEEEKILV EAHAEVGNRW AEIAKRIPGR TENAIKNHWN 240 ATKRRQNSRR KNKQTDAKNG SSSSNKPPQP SILQNYIRSK NFNNKANNNS SSNVTPTPSN 300 ISTTTPTSSS TLTQDEPSKI PFNIFLSDPS DLSSCEHSPL NITADSYSDE ELLFMQNFFN 360 NNNNVHNHNQ QQQPLPIDNY NNGLTANPMD STDWFVTSTP KPNMYTNRNF QAAVHNVESH 420 IGNSTEDPRS INPPTTHPSS DLYLSYLLNG GASSSSSSAN HDHHMGNYYN MNIDLVIHQH 480 QAASATERRE MDLIEMVSSS SSSQFAQGTN TTSFY

Sequence ? help Back to Top

Protein Sequence Length: 515 aa Download sequence

MEGEDGAASD HLHHHHGVYG FQNNHIQTPH QHHNQLFRPG PPLKAIDRFL WSQNNAKNKE  60
RLVSSNGFSS FGGAMGDLQA CSNWPPSSLR EASLDELLFL DHGEAMTWPP EKIQNPNMGF  120
KEDQVKVGSK GVGKKAKKGS SVPLIKGQWT DEEDRKLMRL VKQYGVRKWA QIAEKLVGRA  180
GKQCRERWHN HLRPDIKKDS WTEEEEKILV EAHAEVGNRW AEIAKRIPGR TENAIKNHWN  240
ATKRRQNSRR KNKQTDAKNG SSSSNKPPQP SILQNYIRSK NFNNKANNNS SSNVTPTPSN  300
ISTTTPTSSS TLTQDEPSKI PFNIFLSDPS DLSSCEHSPL NITADSYSDE ELLFMQNFFN  360
NNNNVHNHNQ QQQPLPIDNY NNGLTANPMD STDWFVTSTP KPNMYTNRNF QAAVHNVESH  420
IGNSTEDPRS INPPTTHPSS DLYLSYLLNG GASSSSSSAN HDHHMGNYYN MNIDLVIHQH  480
QAASATERRE MDLIEMVSSS SSSQFAQGTN TTSFY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58850.1	3e-55	MYB family protein