PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0067381
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family E2F/DP
Protein Properties Length: 122aa    MW: 13769 Da    PI: 11.2073
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0067381genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP45.41.3e-1431912271
                 E2F_TDP 22 e.givtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71
                              + ++l+e+a+ L+ +      +++k+RRiYDi+NV +++nliek     ++k+  +w g
  RcHm_v2.0_Chr5g0067381 31 LvESISLDEAARLLLGDahnayVMRTKVRRIYDIANVSSSMNLIEKthavdTRKPTDKWLG 91
                            35789****************999**********************888888888888876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    
MMRKVMRVVM QPGVRMRTPV SIPNLQETRK LVESISLDEA ARLLLGDAHN AYVMRTKVRR  60
IYDIANVSSS MNLIEKTHAV DTRKPTDKWL GLRGKDATSS ASDESRKRAF GTVITNVVRE  120
AK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.16e-36E2F/DP family protein