PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0065451

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB_related

Protein Properties

Length: 662aa MW: 72970.4 Da PI: 9.037

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0065451	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.4	6.7e-08	564	613	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ + + k+Rt ++k++w ++ RcHm_v2.0_Chr5g0065451 564 RRPFSVAEVEALVQAVEKLGTGRWRDVKMRAFenaKHRTYVDLKDKWKTL 613 6789999*****************9766667************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 662 aa Download sequence
MVLQKRLDYG FNGFQVPVTP RAPRSARRRS TISKRDEDNS MGAFDLLATV AGKLLLEGES 60 SPASSHTSTG KEKCSIVNDS CPDGDKPLKV EPCDQGSCDR KFFVSDNISQ GHNQSCSSKE 120 SPVHQNESHS VMTTSNCSER FVSDMLVGGK CKNEIGSFTS KVQAGSSVYR ESGECKLDGE 180 AKVIVKDETN KRGEVLIGTG ADMCSLEDPM VWEGEPPALV SSDSSTKVPI CVDHIPQKPI 240 LASRDDVKIV SRDDDENSSG CTHPSTTTRY LRTAQRIGDR RIRKVLASRY WKAAPKMKDG 300 AYSNSYRDMR PIYHGRKNGY KRQRSQMNMP FKKRRLFDRS TVLKSNGGIS SESFFDSANA 360 ISSSVAGQHS AFQSRNSHVK LRIKSFRVPE LFIEIPETAT VGSLKKTVMD AVTAVLGGGL 420 CVGVLLQGKK LRDDTKTLQQ TGISQDDQID SLGFTLEPNP PHTPTPLCSG DSPRMLPCDV 480 LQPLTRYAPD PSSEASLEPH MAALGSFIES DHDSAPSPTD TSADKSTTDS KALVVVPEMS 540 AEALAVVPGN RKSKRFDIGQ RRIRRPFSVA EVEALVQAVE KLGTGRWRDV KMRAFENAKH 600 RTYVDLKDKW KTLVHTARIS PQQRRGEPVP QELLDRVLTA HAYWSQQQAK QQLKHPESCV 660 LV

Sequence ? help Back to Top

Protein Sequence Length: 662 aa Download sequence

MVLQKRLDYG FNGFQVPVTP RAPRSARRRS TISKRDEDNS MGAFDLLATV AGKLLLEGES  60
SPASSHTSTG KEKCSIVNDS CPDGDKPLKV EPCDQGSCDR KFFVSDNISQ GHNQSCSSKE  120
SPVHQNESHS VMTTSNCSER FVSDMLVGGK CKNEIGSFTS KVQAGSSVYR ESGECKLDGE  180
AKVIVKDETN KRGEVLIGTG ADMCSLEDPM VWEGEPPALV SSDSSTKVPI CVDHIPQKPI  240
LASRDDVKIV SRDDDENSSG CTHPSTTTRY LRTAQRIGDR RIRKVLASRY WKAAPKMKDG  300
AYSNSYRDMR PIYHGRKNGY KRQRSQMNMP FKKRRLFDRS TVLKSNGGIS SESFFDSANA  360
ISSSVAGQHS AFQSRNSHVK LRIKSFRVPE LFIEIPETAT VGSLKKTVMD AVTAVLGGGL  420
CVGVLLQGKK LRDDTKTLQQ TGISQDDQID SLGFTLEPNP PHTPTPLCSG DSPRMLPCDV  480
LQPLTRYAPD PSSEASLEPH MAALGSFIES DHDSAPSPTD TSADKSTTDS KALVVVPEMS  540
AEALAVVPGN RKSKRFDIGQ RRIRRPFSVA EVEALVQAVE KLGTGRWRDV KMRAFENAKH  600
RTYVDLKDKW KTLVHTARIS PQQRRGEPVP QELLDRVLTA HAYWSQQQAK QQLKHPESCV  660
LV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07540.1	1e-139	MYB_related family protein