PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0063971

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Dof

Protein Properties

Length: 354aa MW: 38379.2 Da PI: 9.522

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0063971	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.3	4e-39	80	140	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+alkcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nkks+ RcHm_v2.0_Chr5g0063971 80 PETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKSK 140 67899*****************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence
MVFSSIPVYL DPPNWHQQPN HPLGSGSTEN HPQLPPLPPR QFGTHVGGCG GTDGSGGSGT 60 GSIRPNSMAD RARLAKMPQP ETALKCPRCE STNTKFCYFN NYSLSQPRHF CKTCRRYWTR 120 GGALRNVPVG GGCRRNKKSK TSSSSRSKSP VSASSTENQQ MRQTGSNPTG LISHLSQPQT 180 QSLPFLESIQ NLSRYGGAGN MALNSFNEIQ QAQAQSTDHM GFQIGAGNNL MNLSGGLGMD 240 QWRNLQQIPF LGSTGFDLSS TTGLYPFQNT TEGVDQDSQL RTANSRVTTH QVPPVKVEDH 300 NHGVSLTRPF LGISGNNNNN NNNNNNDNNN QFWGGNAWTD ISGTLNSSST SHLL

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence

MVFSSIPVYL DPPNWHQQPN HPLGSGSTEN HPQLPPLPPR QFGTHVGGCG GTDGSGGSGT  60
GSIRPNSMAD RARLAKMPQP ETALKCPRCE STNTKFCYFN NYSLSQPRHF CKTCRRYWTR  120
GGALRNVPVG GGCRRNKKSK TSSSSRSKSP VSASSTENQQ MRQTGSNPTG LISHLSQPQT  180
QSLPFLESIQ NLSRYGGAGN MALNSFNEIQ QAQAQSTDHM GFQIGAGNNL MNLSGGLGMD  240
QWRNLQQIPF LGSTGFDLSS TTGLYPFQNT TEGVDQDSQL RTANSRVTTH QVPPVKVEDH  300
NHGVSLTRPF LGISGNNNNN NNNNNNDNNN QFWGGNAWTD ISGTLNSSST SHLL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.2	6e-52	Dof family protein