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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr5g0061501 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | AP2 | ||||||||
Protein Properties | Length: 285aa MW: 31447.8 Da PI: 8.4319 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.5 | 2.8e-17 | 153 | 202 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g RcHm_v2.0_Chr5g0061501 153 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 202 78*******************......55************************997 PP | |||||||
2 | AP2 | 27.4 | 8.2e-09 | 245 | 284 | 1 | 44 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAak 44 s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+ RcHm_v2.0_Chr5g0061501 245 SRYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAAR 284 79********.7******5553..2.26**********88*997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence |
MLDLNLSVVG SSSEQNDVFV VGSFPEGSGS ATQMDESGTS NSSVVNADAS SSNDDSCSAR 60 ATVTTFNFDI LKVGGGEEDD VAVTKELFPV NSWPGKGQGQ QYSPASSSAR HNLIELGGPA 120 EVQQKQPQPQ PPPPPPQQPQ VKKSRRGPRS RSSQYRGVTF YRRTGRWESH IWDCGKQVYL 180 GGFDTAHAAA RAYDRAAIKF RGVDADINYN LSDYEEDMKQ MKNLTKEEFV HILRRQSTGF 240 SRGSSRYRGV TLHKCGRWEA RMGQFLGKKY IYLGLFDSEV EAARS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 6e-85 | AP2 family protein |