PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0061501
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family AP2
Protein Properties Length: 285aa    MW: 31447.8 Da    PI: 8.4319
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0061501genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.52.8e-17153202155
                     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                             s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  RcHm_v2.0_Chr5g0061501 153 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 202
                             78*******************......55************************997 PP

2AP227.48.2e-09245284144
                     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAak 44 
                             s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+
  RcHm_v2.0_Chr5g0061501 245 SRYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAAR 284
                             79********.7******5553..2.26**********88*997 PP

Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    
MLDLNLSVVG SSSEQNDVFV VGSFPEGSGS ATQMDESGTS NSSVVNADAS SSNDDSCSAR  60
ATVTTFNFDI LKVGGGEEDD VAVTKELFPV NSWPGKGQGQ QYSPASSSAR HNLIELGGPA  120
EVQQKQPQPQ PPPPPPQQPQ VKKSRRGPRS RSSQYRGVTF YRRTGRWESH IWDCGKQVYL  180
GGFDTAHAAA RAYDRAAIKF RGVDADINYN LSDYEEDMKQ MKNLTKEEFV HILRRQSTGF  240
SRGSSRYRGV TLHKCGRWEA RMGQFLGKKY IYLGLFDSEV EAARS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.36e-85AP2 family protein