PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0061151
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family Dof
Protein Properties Length: 315aa    MW: 34539.9 Da    PI: 7.2593
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0061151genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof128.81.6e-4039100263
                  zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 
                             +e+alkcprCdstntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvPvGgg+rknk+sss
  RcHm_v2.0_Chr5g0061151  39 PEQALKCPRCDSTNTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSS 100
                             7899******************************************************9875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    
MDPSSGQQNQ DMQAHNSLDM LVSSKSQQQT DQRKPRPQPE QALKCPRCDS TNTKFCYYNN  60
YSLTQPRYFC KSCRRYWTKG GTLRNVPVGG GCRKNKRSSS KRSSQDPQQP LTPNSNPLLP  120
SLSYDSNDLS LAFARLQRSC GQLGYDDHLS MLGNPTTNSH SDILSNGSSA SASPGFLDAL  180
RTGFLETHNS NSFQNNLYYG FGSSGGNAMV GEAEMDNGVC GEMGLHPYEE LSNVATTTAV  240
TVTTMKQELS RDIETNNNRV LWGFPWQMNN GDHHNLNMGG GGGGGGAHHD QYDNSGRESW  300
NGLANPSWHG LLPLV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60200.13e-36Dof family protein