PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0058801
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family HD-ZIP
Protein Properties Length: 843aa    MW: 92618.3 Da    PI: 6.4325
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0058801genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.54.8e-182986457
                            -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                              ++t+eq+e+Le++++++++ps  +r++L + +    +++ +q+kvWFqNrR +ek+
  RcHm_v2.0_Chr5g0058801 29 YVRYTSEQVEALERVYAECPKPSSLRRQQLIRDCpilsNIEPKQIKVWFQNRRCREKQ 86
                            5789****************************************************97 PP
2START162.43.4e-511653722204
                             HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT CS
                   START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg 88 
                             +aee+++e+++ka+ ++  Wv+++ +++g++++ +f+ s+++ g a+ra+g+v  +++   +e+l+d++ W +++++ e+      g
  RcHm_v2.0_Chr5g0058801 165 IAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCGGVAARACGLVSLEPT-KIAEILKDRPSWFRDCRSLEVFTMFPAG 250
                             7899******************************************************.7777777777***********9999999 PP

                             ..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE- CS
                   START  89 ..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwveh 169
                               g+++l++++++a+++l+p Rdf+++Ry+ +l  g++v++++S++     p+    +++vRae+lpSg+li+p+++g+s +++v+h
  RcHm_v2.0_Chr5g0058801 251 ngGTIELIYTQTYAPTTLAPaRDFWTLRYTTTLDNGSFVVCERSLSGSGAGPNgasAAQFVRAEMLPSGYLIRPCEGGGSIIHIVDH 337
                             99********************************************999999989999***************************** PP

                             EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
                   START 170 vdlkgrlphwllrslvksglaegaktwvatlqrqc 204
                              +l++++++++lr+l++s+ + ++k++ a+l++ +
  RcHm_v2.0_Chr5g0058801 338 LNLEAWSVPEVLRPLYESSKVVAQKRTIAALRYIR 372
                             ******************************99865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 843 aa     Download sequence    
MAMAVAHHQH RESSSGSSIN KHLNDAGKYV RYTSEQVEAL ERVYAECPKP SSLRRQQLIR  60
DCPILSNIEP KQIKVWFQNR RCREKQRKES SRLQTVNRKL SAMNKLLMEE NDRLQKQVSQ  120
LVCENGYMRQ QLHTVPATDA SCDSVVTTPQ HSLRDANNPA GLLSIAEETL AEFLSKATGT  180
AVDWVQMPGM KPGPDSVGIF AISQSCGGVA ARACGLVSLE PTKIAEILKD RPSWFRDCRS  240
LEVFTMFPAG NGGTIELIYT QTYAPTTLAP ARDFWTLRYT TTLDNGSFVV CERSLSGSGA  300
GPNGASAAQF VRAEMLPSGY LIRPCEGGGS IIHIVDHLNL EAWSVPEVLR PLYESSKVVA  360
QKRTIAALRY IRQIAQETSG EVVYSFGRQP AVLRTFSQRL IRGFNDAVNG FNDDGWSLIN  420
CDGAEDIIMA VNSTKNLTTT NPANSFAFLG GILCAKASML LQNVPPAVLV RFLREHRSEW  480
ADFNVDAYSA ASLKSGSYAY PGMRPTRFTG GQIIMPLGHT IEHEELLEVV RLEGHSFSQE  540
EAFASRDIHL LQICSGVDEN AVGACSELVF APIDEMFPDD APLLPSGFRI IPLESKTSDS  600
KDAMATHRTL DLTSSLEVGS TTNHNAGDLN SFHNARSVLT IAFQFPFESS LQDNVASMAR  660
QYVRNVISSV QRVAMAISPS GLSPSVGPKL SPSSPEALTL ANWICQSYSY HIGAELLQPD  720
SLGGDSMLKH LWHHQDAILC CSLKSLPVFI FANQAGLDML ETTLVALQDI SLDKIFDECG  780
RKTLCADFAK LMQQGFAYLP AGICMSTMGR HISYEQAIGW KVLSGEDNSV HCLAFSFVNW  840
SFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein