PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0058161

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB_related

Protein Properties

Length: 635aa MW: 72525.5 Da PI: 9.8078

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0058161	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.4	6.9e-08	477	539	1	47
TSSS-HHHHHHHHHHHHH.TTTT................-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkq.lGgg................tWktIartmgkgRtlkqcksrwqky 47 +grW++eE e l d+v++ l ++ +W++I++t+g +Rt c ++w++ RcHm_v2.0_Chr5g0058161 477 KGRWSQEEYETLFDLVNMdLRMKvfeekktkhgmlrdniCWEAISETLG-TRTNAVCSLKWYNQ 539 79************975777799********************.**********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 635 aa Download sequence
MGRKERTLLE FESGKEKKKH KEKRKEKAKK DELERNSSVL EVCGDKMGKE VEGLKYDKTG 60 GNHMNSGEEA NKKKKRRREK EGDDMVIDMI NKKELRNDGE KSVGKTVEKV DSTGSVKKTQ 120 KILEDGKVGV ATEYGDVAQI NNKGGNKKKK EKKRKREKAG GELVQNITSD GMEAGVASKR 180 LDGHIVSENM GTGSSETCIR NIKAVDVDGE KTRKKKAKAE TLVNGEVSSR NVEVVNVEDG 240 KKRKKAKSEK HVVADCNRKS EAVNVGNIKK RKKSKSEKRG IAEVCNEDKK KARSRKGSLI 300 AQKSIGAPDN SEKSTPKKAS KRVSFADDVE VFSPSDGPND EHEDLVRGKR FSEEEDKIVK 360 EAVLRYIEEH ALGDDGLNMV LRCKSHPEVK NHPEVKNCWK DIGAALPWRP FKSVYYRAHI 420 LFERAEERIW TPEEYEEVKK FHKDRGADWR SLGDKLGKHR IHVKDAWRRI KLPNQKKGRW 480 SQEEYETLFD LVNMDLRMKV FEEKKTKHGM LRDNICWEAI SETLGTRTNA VCSLKWYNQL 540 TSPLVSQKLW ADIDDYRLLD ALNSLDACCI EDVDWDDLLE HRPGDVCQKR WHQMVKHIGH 600 HGLKSFPEQV EVLSKRYLAD LIEAREIYAS KPAVD

Sequence ? help Back to Top

Protein Sequence Length: 635 aa Download sequence

MGRKERTLLE FESGKEKKKH KEKRKEKAKK DELERNSSVL EVCGDKMGKE VEGLKYDKTG  60
GNHMNSGEEA NKKKKRRREK EGDDMVIDMI NKKELRNDGE KSVGKTVEKV DSTGSVKKTQ  120
KILEDGKVGV ATEYGDVAQI NNKGGNKKKK EKKRKREKAG GELVQNITSD GMEAGVASKR  180
LDGHIVSENM GTGSSETCIR NIKAVDVDGE KTRKKKAKAE TLVNGEVSSR NVEVVNVEDG  240
KKRKKAKSEK HVVADCNRKS EAVNVGNIKK RKKSKSEKRG IAEVCNEDKK KARSRKGSLI  300
AQKSIGAPDN SEKSTPKKAS KRVSFADDVE VFSPSDGPND EHEDLVRGKR FSEEEDKIVK  360
EAVLRYIEEH ALGDDGLNMV LRCKSHPEVK NHPEVKNCWK DIGAALPWRP FKSVYYRAHI  420
LFERAEERIW TPEEYEEVKK FHKDRGADWR SLGDKLGKHR IHVKDAWRRI KLPNQKKGRW  480
SQEEYETLFD LVNMDLRMKV FEEKKTKHGM LRDNICWEAI SETLGTRTNA VCSLKWYNQL  540
TSPLVSQKLW ADIDDYRLLD ALNSLDACCI EDVDWDDLLE HRPGDVCQKR WHQMVKHIGH  600
HGLKSFPEQV EVLSKRYLAD LIEAREIYAS KPAVD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	24	31	RKEKAKKD
2	72	77	KKKKRR
3	72	78	KKKKRRR
4	73	79	KKKKRRR
5	73	78	KKKRRR
6	213	244	RKKKAKAETLVNGEVSSRNVEVVNVEDGKKRK
7	213	247	RKKKAKAETLVNGEVSSRNVEVVNVEDGKKRKKAK
8	240	246	GKKRKKA
9	241	245	KKRKK
10	241	272	RKKKAKAETLVNGEVSSRNVEVVNVEDGKKRK
11	241	275	RKKKAKAETLVNGEVSSRNVEVVNVEDGKKRKKAK
12	242	273	RKKKAKAETLVNGEVSSRNVEVVNVEDGKKRK
13	242	276	RKKKAKAETLVNGEVSSRNVEVVNVEDGKKRKKAK
14	269	273	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41020.1	1e-124	MYB_related family protein