PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0056871
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 328aa    MW: 36019.5 Da    PI: 4.7334
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0056871genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.37.8e-10145187855
                             HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              ErrRR r+++++  Lr+l+P+      +K++Ka+i   Av Y+++L+
  RcHm_v2.0_Chr5g0056871 145 SERRRRGRMKEKLYALRSLVPNI-----TKMDKASIIGDAVLYVQDLE 187
                             6*********************7.....7****************995 PP
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    
MDGMGASGNH DLRGHSVIND FELQDFIDDA NFDQFIDLIR GENEDPAAQF NLDLTSGSFF  60
DNQLCPTTDT VSFFGFDHNI TILCDPPPFL STLPSFGGEM NDIGEEDNDG GDSCGTTTTT  120
TTTTTTTTAT TTKKPKVDRS RTLVSERRRR GRMKEKLYAL RSLVPNITKM DKASIIGDAV  180
LYVQDLEKQA KKLKAEILGL EASLEGSEEN QGSTQNPTKN KLVTDNYHLI PKGAIQIDVS  240
QVKEKGFHVK VGCNRGVGVA TALYKAIESL TSFTVQSSNL NMVNSKIFEI TLALNVKECE  300
HEIMNLPNLK LWVTGAFLNQ GFELATGF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.12e-59bHLH family protein