PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0054461

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB_related

Protein Properties

Length: 747aa MW: 82193.1 Da PI: 4.8548

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0054461	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25	4.3e-08	590	631	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +W +++ el++++++q+G++ ++ Ia ++ gRt+ q+k ++ k RcHm_v2.0_Chr5g0054461 590 KWYEQDTELFYEGIEQFGSD-FSMIALLFP-GRTRDQIKFKFKK 631 799***************.*****.******99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 747 aa Download sequence
MEDLDFEPTG PVRVTGRFRP KAKPKSTKIA STAAASNFPD VVTEDSIPLS STVSDTVPST 60 TSVDVGGVKV THTVGSSSAT SEILGRLEPS GNNEHLWSSV PSLDGDRITN PSESAAADTL 120 QPSVMVAASN GSEGSHSVFG KSASENVDIF SGLECLDDCL TQTTSGAVPA SRKSPDKVNG 180 EKCGAPTHCS VESSAFLVCD VAEAQTISDY CATQDPVSCT EAAMSIEHGE IQLETKEIEA 240 LDVVFEAPIS TGCHAGKFQP KLRVKKGKEN PNIPHPEVES TILSQPAHFE TGDMDESSFC 300 AFPPGDVHNH VSPTFGDSIA PNPTPNFQVN AESFAETTKL DEAVYGDAVY SEGICAGSHN 360 SGIGKASTVS NRPQSQKRKG SAADEAKDGT SARKSRKRFP HQQVDDSGNN TNEDSFNAEN 420 SSDYDGNEDG EHNTERRKKA PRKSKVPVSE NEKPVQKRKR TKKAPDEPTK EPTKKKFSHS 480 TRRNRRHVDK SLLEIPEDEI DPQKVPMKDL IRLREYRERV EIKEAAKLKT PASDQSANDE 540 FHMEASHNEE NFGFEHMSSD ENQVHYRDRV STSYCSFNYQ SFMKKQRPAK WYEQDTELFY 600 EGIEQFGSDF SMIALLFPGR TRDQIKFKFK KEVRHNPLRI NEAFRRQSKD NSKYVLVINE 660 LQKGAGEKLE SNADESSDMA GQEEVELTHD NNREVAKPEL DKIEDMETDV AAAEVQHEEP 720 AVAQVHSPMK SDQSDDGDGF GGWDDDF

Sequence ? help Back to Top

Protein Sequence Length: 747 aa Download sequence

MEDLDFEPTG PVRVTGRFRP KAKPKSTKIA STAAASNFPD VVTEDSIPLS STVSDTVPST  60
TSVDVGGVKV THTVGSSSAT SEILGRLEPS GNNEHLWSSV PSLDGDRITN PSESAAADTL  120
QPSVMVAASN GSEGSHSVFG KSASENVDIF SGLECLDDCL TQTTSGAVPA SRKSPDKVNG  180
EKCGAPTHCS VESSAFLVCD VAEAQTISDY CATQDPVSCT EAAMSIEHGE IQLETKEIEA  240
LDVVFEAPIS TGCHAGKFQP KLRVKKGKEN PNIPHPEVES TILSQPAHFE TGDMDESSFC  300
AFPPGDVHNH VSPTFGDSIA PNPTPNFQVN AESFAETTKL DEAVYGDAVY SEGICAGSHN  360
SGIGKASTVS NRPQSQKRKG SAADEAKDGT SARKSRKRFP HQQVDDSGNN TNEDSFNAEN  420
SSDYDGNEDG EHNTERRKKA PRKSKVPVSE NEKPVQKRKR TKKAPDEPTK EPTKKKFSHS  480
TRRNRRHVDK SLLEIPEDEI DPQKVPMKDL IRLREYRERV EIKEAAKLKT PASDQSANDE  540
FHMEASHNEE NFGFEHMSSD ENQVHYRDRV STSYCSFNYQ SFMKKQRPAK WYEQDTELFY  600
EGIEQFGSDF SMIALLFPGR TRDQIKFKFK KEVRHNPLRI NEAFRRQSKD NSKYVLVINE  660
LQKGAGEKLE SNADESSDMA GQEEVELTHD NNREVAKPEL DKIEDMETDV AAAEVQHEEP  720
AVAQVHSPMK SDQSDDGDGF GGWDDDF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	456	463	QKRKRTKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	7e-39	MYB_related family protein