PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0051961
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 328aa    MW: 36513.4 Da    PI: 4.5214
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0051961genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.58.7e-152774148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g W++eEde+l ++    G g+W+ +ar  g+ R++k+c++rw +yl
  RcHm_v2.0_Chr5g0051961 27 KGLWSPEEDEKLMRYMLNNGQGCWSDVARNAGLERCGKSCRLRWINYL 74
                            678*******************************************97 PP
2Myb_DNA-binding48.91.5e-1580123146
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                             rg+++++E++l+++ + +lG++ W+ Ia++++ gRt++++k++w++
  RcHm_v2.0_Chr5g0051961  80 RGAFSPQEEDLIIHFHSLLGNR-WSQIAARLP-GRTDNEIKNFWNS 123
                             89********************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    
MRKPEPSVVS STGKNNKNNS MSNKLRKGLW SPEEDEKLMR YMLNNGQGCW SDVARNAGLE  60
RCGKSCRLRW INYLRPDLKR GAFSPQEEDL IIHFHSLLGN RWSQIAARLP GRTDNEIKNF  120
WNSTIKKRLK VLSSSSSSTA SPNASDSSSD QPNNKDFFTA AGGGGGFMNI IPPSMMPIYG  180
DSSMQSTSLI NHMFDPFPMV EHGGYYNNGN PCTAQIGSSV GSGADDCGFE ENIEAFGNVN  240
IGVEEDIFVP PLESVSTTDQ DQNLKTETIF YDNNNYYSNS NNIIKGENMI GVGNYFEDDQ  300
DQGLTMGEWD LEDLMKDVSS FPFLDYQS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08500.13e-73MYB family protein