PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0047281

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

E2F/DP

Protein Properties

Length: 463aa MW: 50771.8 Da PI: 4.7666

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0047281	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	86.6	1.9e-27	142	207	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 r+++sL+llt+kf++l++++e+gi++ln++a++L +v ++RRiYDi+NVLe+++liekk kn+i+wkg RcHm_v2.0_Chr5g0047281 142 RYDSSLGLLTKKFINLIKHAEDGILDLNKAADTL---EV--QKRRIYDITNVLEGIGLIEKKLKNRIQWKG 207 6899****************************...99..**************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 463 aa Download sequence
MSGYRAPNPR LPNRPSASSP SPPSSRPSLL HSTTTPSLPT AARRRPPITC PPRALPSSPP 60 LGLSALKRKS DTAYYDEPND RTAAPEYTDV VNSPLQTPVP VKVGKANKAS RLSKLNRAGP 120 QTPASNVGSP SGANLTPAGP CRYDSSLGLL TKKFINLIKH AEDGILDLNK AADTLEVQKR 180 RIYDITNVLE GIGLIEKKLK NRIQWKGLEA TRTGDADENY DGLKAQVENL STEEGRLDEQ 240 IREMQERLSN LSEEESNKKW LFVTEEDIKG LPCFQNETLI AIKAPHGTTL EVPDPDEAVD 300 YPQRRYRMVL RSMMGPIDVY LVSQFEEKFE EINGAEEPGS IPSTSGLCEN PAPTIVTEDT 360 GKHVEMQGQE DHRVSADPTA SQDFMSGIMK IVPSDVNCDA DYWLLSDDAS VSITDIWRTE 420 TGVEWNEFGA LNEDYSMGNV TPRAQTLPSS ATEVPSTANP TRS

Sequence ? help Back to Top

Protein Sequence Length: 463 aa Download sequence

MSGYRAPNPR LPNRPSASSP SPPSSRPSLL HSTTTPSLPT AARRRPPITC PPRALPSSPP  60
LGLSALKRKS DTAYYDEPND RTAAPEYTDV VNSPLQTPVP VKVGKANKAS RLSKLNRAGP  120
QTPASNVGSP SGANLTPAGP CRYDSSLGLL TKKFINLIKH AEDGILDLNK AADTLEVQKR  180
RIYDITNVLE GIGLIEKKLK NRIQWKGLEA TRTGDADENY DGLKAQVENL STEEGRLDEQ  240
IREMQERLSN LSEEESNKKW LFVTEEDIKG LPCFQNETLI AIKAPHGTTL EVPDPDEAVD  300
YPQRRYRMVL RSMMGPIDVY LVSQFEEKFE EINGAEEPGS IPSTSGLCEN PAPTIVTEDT  360
GKHVEMQGQE DHRVSADPTA SQDFMSGIMK IVPSDVNCDA DYWLLSDDAS VSITDIWRTE  420
TGVEWNEFGA LNEDYSMGNV TPRAQTLPSS ATEVPSTANP TRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22220.2	1e-138	E2F/DP family protein