PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr5g0042601 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | WRKY | ||||||||
Protein Properties | Length: 126aa MW: 13962.8 Da PI: 8.2371 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 61.5 | 1.6e-19 | 68 | 107 | 20 | 59 |
S-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 20 fprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +prsYY Ct agCpv+k+ver+++dpk v++tYeg+Hnh+ RcHm_v2.0_Chr5g0042601 68 TPRSYYECTNAGCPVRKHVERASHDPKSVITTYEGKHNHD 107 7**************************************7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 126 aa Download sequence |
MDVGGIDVTP VVKPIREPQV VVQTLSAVDI LDDGYRWHKY GPSSTSSSPS PAPRISRLRT 60 SLLGFSITPR SYYECTNAGC PVRKHVERAS HDPKSVITTY EGKHNHDVMM SQVQGLVAMT 120 LWDQQP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26640.1 | 7e-40 | WRKY family protein |