PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr5g0040281 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MYB | ||||||||
Protein Properties | Length: 221aa MW: 24781.9 Da PI: 9.8492 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.8 | 1.7e-10 | 36 | 79 | 1 | 44 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 +g+WT+ Ed++ ++v + G g+W+++ g++R++k+c++rw RcHm_v2.0_Chr5g0040281 36 KGPWTAVEDQIPMEYVSKQGEGNWNSVQWNSGLKRCGKSCRLRW 79 79****************************************** PP | |||||||
2 | Myb_DNA-binding | 26.5 | 1.5e-08 | 90 | 129 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqk 46 +g++T+eE+ l++++++++G+ mg g++++++k++w++ RcHm_v2.0_Chr5g0040281 90 KGAFTPEEERLILELHAKYGNM-------QMGtHGLSDNEIKNYWNT 129 799*****************77.......99999***********96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence |
MAHNGINNIN GTAMYGEGNS ELSCVFMEGN NMGLKKGPWT AVEDQIPMEY VSKQGEGNWN 60 SVQWNSGLKR CGKSCRLRWW ANHLRPNLKK GAFTPEEERL ILELHAKYGN MQMGTHGLSD 120 NEIKNYWNTR VKKRLRKGLS LYPHDINPSK RVCQSHSHSQ QNAISIPTGV TQLSTTTVPQ 180 TDTSFSFQLQ ASSSQNKTQL PTLPSQNHPN STLNISFPPS I |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 130 | 136 | RVKKRLR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G32460.1 | 2e-53 | MYB family protein |