PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0040211

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 434aa MW: 47687.1 Da PI: 10.089

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0040211	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.8	1.2e-18	36	83	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed++l d+v+q+G g+W+++ r g++R++k+c++rw ++l RcHm_v2.0_Chr5g0040211 36 KGPWTATEDQILMDYVRQHGEGNWNSVQRNSGLNRCGKSCRLRWANHL 83 79******************************************9986 PP
2	Myb_DNA-binding	52	1.7e-16	89	132	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE+ l++++++++G++ W++ a+ ++ gRt++++k++w++ RcHm_v2.0_Chr5g0040211 89 KGSFTPEEERLILELHAKYGNK-WARMASQLP-GRTDNEIKNYWNT 132 799*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence
MTHSGNCING GGAVLSGEGR PLETNGGMEG NKGLKKGPWT ATEDQILMDY VRQHGEGNWN 60 SVQRNSGLNR CGKSCRLRWA NHLRPNLKKG SFTPEEERLI LELHAKYGNK WARMASQLPG 120 RTDNEIKNYW NTRVKRRQRQ GLPLYPHDIK QSQQQSHSQS QPTTLTIPKG LTQSSTSTGM 180 PPTGQNFSFQ VQNSSSSQTH QLPLIAPTDP YHSAPSSPKS ALSHSLPLIF DHPTDSSFTF 240 HCPTPILGAP LRYKRHPDSR AISPPVSPSL QRSTSILRAS SMPDISYNQH IAAGNMSMPD 300 MSSFQFQPTR NFNGSLPPLP RSTSVPFDFG DSTRSLYSVK SSELPSSRVS QTQSQSDQIT 360 NDNKLNVVAA ANETHYSNVL EELLREAEAL ASVATPRKAS IGLGGRSFED KHVLDGYGRW 420 LQATGSTNNS LSGK

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence

MTHSGNCING GGAVLSGEGR PLETNGGMEG NKGLKKGPWT ATEDQILMDY VRQHGEGNWN  60
SVQRNSGLNR CGKSCRLRWA NHLRPNLKKG SFTPEEERLI LELHAKYGNK WARMASQLPG  120
RTDNEIKNYW NTRVKRRQRQ GLPLYPHDIK QSQQQSHSQS QPTTLTIPKG LTQSSTSTGM  180
PPTGQNFSFQ VQNSSSSQTH QLPLIAPTDP YHSAPSSPKS ALSHSLPLIF DHPTDSSFTF  240
HCPTPILGAP LRYKRHPDSR AISPPVSPSL QRSTSILRAS SMPDISYNQH IAAGNMSMPD  300
MSSFQFQPTR NFNGSLPPLP RSTSVPFDFG DSTRSLYSVK SSELPSSRVS QTQSQSDQIT  360
NDNKLNVVAA ANETHYSNVL EELLREAEAL ASVATPRKAS IGLGGRSFED KHVLDGYGRW  420
LQATGSTNNS LSGK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32460.1	1e-72	MYB family protein