PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0039441

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 774aa MW: 89912.8 Da PI: 7.7882

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0039441	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	52.3	1.9e-16	78	201	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...................................teker 52 kfY+ Y+ GFsvrk+k k+ r g +++r++vCsk+gkr+ k++ +++ RcHm_v2.0_Chr5g0039441 78 KFYSYYSLAKGFSVRKQKLDKN-RAGLVIRRQLVCSKQGKRRAPKDTishqqgskgkqdncqlssigncqqnstnisgqnphKKQCT 163 6*****************99.7778************9999***************************999888888 PP FAR1 53 rtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 +tr tr++C a+++v+ + + +++ +++ +eHnH+l RcHm_v2.0_Chr5g0039441 164 ETRRATRVNCPASFVVRFCTkRRVYYASEFITEHNHAL 201 9************999899***********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 774 aa Download sequence
MEESGLRYTD RQYYNSGMDP NAEEGSSTDN SDEEIEYTNL MEEAEMQDCT RYRGKLYKDL 60 KLEDLKEVEF NSIEEVDKFY SYYSLAKGFS VRKQKLDKNR AGLVIRRQLV CSKQGKRRAP 120 KDTISHQQGS KGKQDNCQLS SIGNCQQNST NISGQNPHKK QCTETRRATR VNCPASFVVR 180 FCTKRRVYYA SEFITEHNHA LGRPEHRQFR RSHLRDRNLA QLNASRKIVV RTCHAYEFLV 240 HQAGGYEFVG LYNKPQGERK EVVMDGDAQS LVTWMNFKAM RDPHFYCIFS VDKEGRLANV 300 FWRDGQSLTD YNAFGEVLIF DSSEKCNIYG KPLAVFVGCN NHRATVLFGY ALLVDETKET 360 YDWVITCFLT SMRGKKPISV ITNSDDAICD VVTNLIPRAR HRLCAWHVGK NVCQHLKDVD 420 TQRHFFHLIF AGLTIEEWEM AWQYFVAMNR LENNEWVTSM YNKRERWAEA FLRDHFFGGI 480 CSTQRCDRMH RNLEEGIDRY MRLYEVLPRM EKTIERIRNQ VLQDDYQSQN YDPVYGSHMR 540 CLQEEIGKRF THDIFLLIKE QINFESKFVI GPRSVHPKTG ASLISLMQYG KPERRWIVSY 600 QPDESNPTLV CSCKLFESDG IPCCHIFAVM KFEMLTTFPE SLVNKRWTKE ATVKTAISSS 660 GLVSNMSVQI ARYGELMVQC AKICHIASYS EEGYNEIREA LSQLTIRSQK YSGESEFENG 720 VHSQSQPMNL THHLEEARAF EFFAGYEKSK NAALDSQITG LPDFFQNFRP FPNV

Sequence ? help Back to Top

Protein Sequence Length: 774 aa Download sequence

MEESGLRYTD RQYYNSGMDP NAEEGSSTDN SDEEIEYTNL MEEAEMQDCT RYRGKLYKDL  60
KLEDLKEVEF NSIEEVDKFY SYYSLAKGFS VRKQKLDKNR AGLVIRRQLV CSKQGKRRAP  120
KDTISHQQGS KGKQDNCQLS SIGNCQQNST NISGQNPHKK QCTETRRATR VNCPASFVVR  180
FCTKRRVYYA SEFITEHNHA LGRPEHRQFR RSHLRDRNLA QLNASRKIVV RTCHAYEFLV  240
HQAGGYEFVG LYNKPQGERK EVVMDGDAQS LVTWMNFKAM RDPHFYCIFS VDKEGRLANV  300
FWRDGQSLTD YNAFGEVLIF DSSEKCNIYG KPLAVFVGCN NHRATVLFGY ALLVDETKET  360
YDWVITCFLT SMRGKKPISV ITNSDDAICD VVTNLIPRAR HRLCAWHVGK NVCQHLKDVD  420
TQRHFFHLIF AGLTIEEWEM AWQYFVAMNR LENNEWVTSM YNKRERWAEA FLRDHFFGGI  480
CSTQRCDRMH RNLEEGIDRY MRLYEVLPRM EKTIERIRNQ VLQDDYQSQN YDPVYGSHMR  540
CLQEEIGKRF THDIFLLIKE QINFESKFVI GPRSVHPKTG ASLISLMQYG KPERRWIVSY  600
QPDESNPTLV CSCKLFESDG IPCCHIFAVM KFEMLTTFPE SLVNKRWTKE ATVKTAISSS  660
GLVSNMSVQI ARYGELMVQC AKICHIASYS EEGYNEIREA LSQLTIRSQK YSGESEFENG  720
VHSQSQPMNL THHLEEARAF EFFAGYEKSK NAALDSQITG LPDFFQNFRP FPNV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	7e-66	FAR1 family protein